| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2913 |
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| Symbol | |
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| ID | 4688635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 3066903 |
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| End bp | 3070349 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639835920 |
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| Product | type 4 fimbrial biogenesis protein PilY1 |
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| Protein accession | YP_983133 |
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| Protein GI | 121605804 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.518902 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0349155 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATAAAC TCATGAGCTT TCAATTTTCA AAAATTCTTG ATGCGAAATA CATTAAAAAA
TTTAATGGTA CTACTGGGTT AATTACATTG AAGTCAAGAA AGTGCAAATA TTTTACTATC
CGGCCACTAG TCGCGGCCTG TGTAGCTTTA CTCGCTGCAG CACCCACATT ATCGGTCGCA
GCACTAGCGC TTGCCCAGTA CCCACCCGTC AGCGGCGGGA ACGAACCTGC ACCGAATGTC
ATTATCTCAG TGGATGACTC GGGGAGTATG AACTGGGATG TAAATGGAAA TAGCACGAAC
ACGACAAATA ATAAAAGAAT AACGCTTCTC AAAAACTCAT TAAAATCGGT GTTTGGCAAC
CCAACGGCAA ACCCGCCGAC CAACGGAGTA GTTCCCGACA ATCGCATTCG TCTGGCATGG
CAAGTGATGC ATAACAACGG CGATGCATCA GGCGCAAGTT CCTTAACACC TGGGAACACC
AATTCCATGA AGGCGTTCAG CGGCACTCAC AGAACCAACT TCAACACCTT TATTAATTCG
CTTAGTGCAA GCGGTGATAC TCCCAGTCAC AAAATGGCCA AGCAGGCGCT GGACTATATG
AAGTCGCCAG CTGGAACCAA TAGTCCTTGG GCGGATATGC CCGGAACAGC GCAAACAACG
CAATATTTGA GCTGCCGCCG CAGTTACCAC ATTTTCATGA CGGATGGAGG GTGGAACTCT
GATCCCCGGG AATTTGTTGG CAACGCCGAC GGCACAGCAC GCACACTTGG CGATGGCACG
ACTAGCTATG ATCCCGCCTC AGCACAAGTT CGCATCTATA AGGATGCGTA TGGTGGCGGT
AAGGATATTT GGGTCGACTC CGGTTGGCGT GATCCTGGCC ACTGGGAACG GCAAGACTAC
CCAAGCACCT TGGCTGATTT TGCCTTTGAG AGTTGGGCCT CTGATTTGCA GAACGGAAGC
AACAGCACTC AAAACATGGT AAATAATGTG CGTCCACTCA TTAAAAAGAA TGGGGTCGAA
ACGGTGGGCG GTGTCGGTCT TCAAGAATTT TGGAATCCAA AAAACGATCC CGCAACCTGG
CAGCATATGG TGACTCACAC CATAGGATTT GGCAACGAAG CGACGTCATG GAGTAGAAAC
AATACTGATT TCGAACCCTA TTGGAACAAC CCAACCAACA GCACCAACAG CACCTATGGG
GGAGGATATC CTCGATTGGT AAGCGGTGAC GTGACTTGGC GCGACCCCAT TGATAACTGC
GATACTGACT GTCGTCCGTT TGAACTTTGG CACATGGCGC TTAATGGTCG GGGAAAGTTT
TATCCCGCTG TCAACGCTGA TTCATTAACC GCAGCATTCA ACGATATTCT TAGCACTGTT
ATTGCAGATA CATCAAGGCC GCTGGTCTCT ATTGCTGCCA ATTCAAGTTC TCTGCGATCC
GGGCTGAATG CCTATCTCGC GGGGTATGCT TCAGAAAATT GGTTAGGCAC ATTAACTGCC
CGCCCCATCG ACAGTACGAC AGGGACCATT GGAGCCTCTG CGACGTGGGA TGCAGCAGCA
TTGCTTGACG ATGCGAACTA TTCAGTCAGT AGCCGGTTTG TGCTTTCCTA CAACGGCACA
GCAGGAATTG CGTGGACAAC CTGGAACGAT TTTCCCACTG CACAAAAGAC TCCCCTAGAC
AAAAACAGCA GCGGTACCGT AGACAGCAAG GGACAAAACC GGGTGGATTA CCTACGGGGT
GACAGAACCA AAGAAGCCTC TCAGACTAAT GGTGTGTTTC GCAACCGGAG TTCACGTTTG
GGGGACATCG TAAACTCCAA TATCTGGTAC ACCGGCAAGC CTGCCAGCGG TTACTCCTTC
AGCAACTATG ACACTTTCAG GTCAACAAAC ACGGGTGGTA AGGGTGGCCG AACTCCCATG
ATTTATGTGG GTGCCAACGA TGGCATGCTG CATGGTTTTG CTGCAGGCAA CTGGCCAAAT
GAAACTTCAC CCACAATTGT CGGCGGGAAA GAACTTCTTG CCTATATTCC CCAAGGTGTT
GCTCAAGGTG ATCTGCGCAA ACTCACCGAT ACCGGTTACA GCCACCAATA TTTTGTGGAT
GGGAGTCCTT TCACAGGTGA CGCCTACCTT GGTACCACAC CCGCGTGGGC TACCGTGCTT
GTAGGGAGTC TGGGGGCAGG TGGCAAAGGC TATTTTGTAC TCAACGTCAC GGACCCAGCG
AACTTCACAA CGTCCAATGT TGCGAATCTG GTTATCAAGG ACACCACGGC GACGACAGAT
GCAGACATCG GCAATATTAT GTCGCCCCCC GTGGTTGATG ACGCCATTGC AGGCAAGTCG
CGTCAAATTG TGCGCATGAA TAATGGGAGA TGGGCTGCAG TACTCGGCAA CGGCTACAAC
AGTACCAATG AGGCCCCAGT GCTGCTCATT CAATACCTGG ACGGGGACAA AGCTATCAAG
AAACTCTCTC CCTGTGCAGA CACAAGCGCG ACTTGCAGTT TTAAAGGCAA CAATGGATTG
GCTAGCCCAC AGTTGATTGA CCTCAATGGC GACGGCAAGC TGGATATTGC CTATGCAGGC
GACCTGAAGG GTAATGTGTG GAAGTTCAAT TTATCCAGTG CGACCGAGTC CGACTGGTCG
ACAGCTTTTT CAGGCCAGCC GTTCTTTGTG GCCAAGACCG TTGCATCTGT TACTCCTTCC
ATTGCATCGG TGAATCAACC CATCACGACC GCGCCGTTCT GGATGCCGCA TCCTAGCGGT
GGAATCATGC TGGCTGTCAG CACGGGACAA AATCTGACTA TCGCAGATCA GACCAATACG
AACACTAACT CCGTATATGG TCTTTGGGAC AACAGCACAT TTTCTTATGG AACAAGTGGC
GTCACCATTA CGGATGGAAC CGCCATTAAT ACCACTAGCA GTACAGGTTT GCCAAGTACC
TTAGTACAAC AAACCATATC AACCACTCCA ATTATAGATG GAGGTAAAAA TTACTATACC
TCATCAACCA ATGCCGTCAT TTATCCCGCC AAACGTGGCT GGTACTTGAA CTGGTCAATG
GCCGCTGGTC AACGTGTATT GCACAATTCA AGGGCATTTT CAGGACAGAA AGTTTTGATT
CAAAGCACGG TTCCAAAATC AGGAGGAGCC GCAAGCGGAG AAACCTGCTC TCCCACTACA
AGCACTGAGC GCAGTTTCTT ATCTGTTTTC AACATGTTTA CTGGAAAACC ATCAGCACTA
CCTGCATTCT CACTTACAAG CACTACCACA TCCAATACCA ATATAACTAC GATTGAGAAC
ACTACTAGCG GTGACAACCT AATACTTCGT ACGGATGAGG TGATTAAAGT TGTAAATACT
TGTCCCGTCG GGGAATCATG TACTTCAAAG GATTTAAATC CCGATAAATA TATAGGCATT
CGTGCAAACT GGCGTGAAAT TCAATAA
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| Protein sequence | MNKLMSFQFS KILDAKYIKK FNGTTGLITL KSRKCKYFTI RPLVAACVAL LAAAPTLSVA
ALALAQYPPV SGGNEPAPNV IISVDDSGSM NWDVNGNSTN TTNNKRITLL KNSLKSVFGN
PTANPPTNGV VPDNRIRLAW QVMHNNGDAS GASSLTPGNT NSMKAFSGTH RTNFNTFINS
LSASGDTPSH KMAKQALDYM KSPAGTNSPW ADMPGTAQTT QYLSCRRSYH IFMTDGGWNS
DPREFVGNAD GTARTLGDGT TSYDPASAQV RIYKDAYGGG KDIWVDSGWR DPGHWERQDY
PSTLADFAFE SWASDLQNGS NSTQNMVNNV RPLIKKNGVE TVGGVGLQEF WNPKNDPATW
QHMVTHTIGF GNEATSWSRN NTDFEPYWNN PTNSTNSTYG GGYPRLVSGD VTWRDPIDNC
DTDCRPFELW HMALNGRGKF YPAVNADSLT AAFNDILSTV IADTSRPLVS IAANSSSLRS
GLNAYLAGYA SENWLGTLTA RPIDSTTGTI GASATWDAAA LLDDANYSVS SRFVLSYNGT
AGIAWTTWND FPTAQKTPLD KNSSGTVDSK GQNRVDYLRG DRTKEASQTN GVFRNRSSRL
GDIVNSNIWY TGKPASGYSF SNYDTFRSTN TGGKGGRTPM IYVGANDGML HGFAAGNWPN
ETSPTIVGGK ELLAYIPQGV AQGDLRKLTD TGYSHQYFVD GSPFTGDAYL GTTPAWATVL
VGSLGAGGKG YFVLNVTDPA NFTTSNVANL VIKDTTATTD ADIGNIMSPP VVDDAIAGKS
RQIVRMNNGR WAAVLGNGYN STNEAPVLLI QYLDGDKAIK KLSPCADTSA TCSFKGNNGL
ASPQLIDLNG DGKLDIAYAG DLKGNVWKFN LSSATESDWS TAFSGQPFFV AKTVASVTPS
IASVNQPITT APFWMPHPSG GIMLAVSTGQ NLTIADQTNT NTNSVYGLWD NSTFSYGTSG
VTITDGTAIN TTSSTGLPST LVQQTISTTP IIDGGKNYYT SSTNAVIYPA KRGWYLNWSM
AAGQRVLHNS RAFSGQKVLI QSTVPKSGGA ASGETCSPTT STERSFLSVF NMFTGKPSAL
PAFSLTSTTT SNTNITTIEN TTSGDNLILR TDEVIKVVNT CPVGESCTSK DLNPDKYIGI
RANWREIQ
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