Gene Pnap_2908 details

Gene Information

• Locus tag: Pnap_2908
• Symbol: nrdR
• ID: 4690000
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polaromonas naphthalenivorans CJ2
• Kingdom: Bacteria
• Replicon accession: NC_008781
• Strand: +
• Start bp: 3063563
• End bp: 3064012
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 639835915
• Product: transcriptional regulator NrdR
• Protein accession: YP_983128
• Protein GI: 121605799
• COG category: [K] Transcription
• COG ID: [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
• TIGRFAM ID: [TIGR00244] transcriptional regulator NrdR

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0801227
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.0399759
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAATGTC CTTTTTGCGG TCACCTTGAA ACCCAGGTTG TGGAAACCCG GATTTCCGAA 
GACGCCGAAT TCATACGCCG CCGCCGCCAG TGCGGCGCGT GTGAAAAACG CTTCACCACC 
TACGAGCGGC CCGACGTCAG CTTTCCGTCC ATCGTCAAAA AGGACGGCCG CCGCACCGAC 
TACCAGCGCG GCAAAATCCT AGGCTCGATG CGGCTGGCCC TGCGCAAGCG CCCGGTCAGC 
ACCGCGCAGA TCGATGCAGC CGTCGAGCAG ATCGAGGAAA AGCTGCTGAG CCTCGGGCTG 
CGCGAGGTGG CTTCGAGCCG CCTGGGCGAA TTGGTCATGC TGGAGCTGAA AAAGCTCGAC 
AAGATCGCCT ACATCCGCTT TGCCAGCGTG TACCGGAGCT TTGAGGATAT TGACGAGTTC 
AAGACGCTGG TGGATGAGGT TGGGCGGTAG 

 

Protein sequence

MKCPFCGHLE TQVVETRISE DAEFIRRRRQ CGACEKRFTT YERPDVSFPS IVKKDGRRTD 
YQRGKILGSM RLALRKRPVS TAQIDAAVEQ IEEKLLSLGL REVASSRLGE LVMLELKKLD 
KIAYIRFASV YRSFEDIDEF KTLVDEVGR