Gene Pnap_2888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2888 
Symbol 
ID4686493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand+ 
Start bp3038786 
End bp3039481 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content58% 
IMG OID639835894 
ProductTetR family transcriptional regulator 
Protein accessionYP_983108 
Protein GI121605779 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.465905 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0499957 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCGT TTTCAGGAGA CACCGAAGTG GCCCGTCGAA CCAAAGAAGA AGCGTTGGTT 
ACCCGCAACA AACTGCTGGA TGCAGCCGAG TGCCTGTTTC AGTCGCAAGG GGTTTCGCGC 
ACCACGCTGC AGGACATTGC CCTGCGGGCA GGCGCGACAC GCGGCGCCGT CTATTGGCAT 
TTCAAGGACA AGGCGGACCT GTTCAACGCC ATGATGGAGC GCGTCACGCT GCCGCTGGAG 
GCTTATTTCA ACCATGAAGC CGCCCCGGCG GAAACCAGCA GCGATGCCTA TCCGCTTGAA 
CGCATGCGCA ACGCCATCCT CAAGGCCTTG AACCAGATCG TGAATGACCC GCAGACTCGC 
CGCGTCCTGG AAGTCGCGAC GCAAAAGGTG GAATACATTG AAGAACTCAA AACCATCCGC 
CTTCGTCACC TGGCGGTGCG CAATGGTTTT TTGTGCAGGG TTCAGCAAGG CCTGGATGCG 
GCATCCCGGC ATGAAAACCT GAAGCTGCCC CTGTCAAGCG CACTGGCCGC GCAGGGTTTG 
CACGCATTGA TTGACGGCCT GATCCAGAAC TGGCTGCTCG ACCCGCAAGC CTTTGACCTG 
CTGGAAGCGG GTCAAAGCAC GATGGACATT TACTTTACCG GCCTGGGGTT TGGCAGCGAG 
CCGCAAAGCC TTGCACCGGC AGCAGGGAAA AAGTAA
 
Protein sequence
MKSFSGDTEV ARRTKEEALV TRNKLLDAAE CLFQSQGVSR TTLQDIALRA GATRGAVYWH 
FKDKADLFNA MMERVTLPLE AYFNHEAAPA ETSSDAYPLE RMRNAILKAL NQIVNDPQTR 
RVLEVATQKV EYIEELKTIR LRHLAVRNGF LCRVQQGLDA ASRHENLKLP LSSALAAQGL 
HALIDGLIQN WLLDPQAFDL LEAGQSTMDI YFTGLGFGSE PQSLAPAAGK K