| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2886 |
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| Symbol | |
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| ID | 4686561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3034154 |
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| End bp | 3037327 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639835892 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_983106 |
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| Protein GI | 121605777 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.315153 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.171354 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGT TTTTTATCGA ACGACCGATT TTTGCCTGGG TGATTGCCCT GTTCATCCTG
GTGATGGGCA GTGTCGCCAT CACGCAGCTG CCGATTTCCC AATATCCGCC GGTCGCTCCG
CCGTCCATCG TGGTGACTGC CAGCTATCCC GGCGCTTCGG CCCGGACGCT CGAAGACAGC
GTGCTCAGCG TGATCGAGCG CGAGATGAAC GGCTCACCCG GCCTGATCTA CATGGAGTCG
GTCGCCCAGG CCAACGGCTC GGGCACCCTG ACGCTGACCT TCGAGACCGG CACCAACCCC
GACCTGGCCC AGGTCGATGT GCAAAACCGT CTGTCGCGCG CCTCGCCGCG CCTGCCGCAG
GCCGTGACGC AGCAGGGCGT GCGGGTGGAC AAGTCGCGCT CGAACTTCCT GCTGTTCACC
ATGCTGTCGT CCGACAACCC GGCGATTGAC CCGATTGCGC TGGGCGACTA TGCCTCGCGC
AACGTGATCC CCGAACTCCA GCGCCTGCCC GGCATCGGCC AGGCCCAGCT GTTCGGCACC
GAGCGTGCCA TGCGGATCTG GATTGATCCG GCCAAGCTGA CCGGTTTTGC GCTCTCGTCG
CTGGATGTGA CCAGGGCCAT CGCTGCGCAG AACGCGCAAA TTGCCTCCGG CACGATTGGC
GATTTGCCCA ATGTGGCCGG GCAGGGCATC GCCGCCACGG TGGTGGTCAA CGGCCAGCTC
TCCAGCGTCG AGCAGTTCGG CAACATCGTG CTGCGGGCCG CGACCGACGG ATCGACCGTG
CGCCTGAAGG ACGTGGCGCG CATCGAACTG GGCGCGCAGA CTTATGCGAC TTCGGCGCGC
CTGAACGGCA AGCCGGCCAC CGGCATCGGC CTGCAACTGG CCCCGAGCGG GAATGCGCTG
GGCGCGGCCA AGGCCGTGCG CGCCAAGATG GAGCAGCTCA AGCCTTATTT CCCCCAGGGC
GTGAGCTATT CGATTCCCTA TGACAGCTCG CGCTTTGTCA GCATCTCCAT CAAGCAGGTG
GCCGAAACGC TGGTTGAAGC GGTGGTGCTG GTGTTCCTGG TGATGTTCTT GTTCCTGCAG
AACTGGCGCT ACACCGTCAT CCCGACCATC GTCGTGCCGA TTGCGCTGCT GGGCACGTTT
GCCACGCTGC TGGCGCTGGG TTTTTCGATC AACGTGCTGA CCATGTTCGG CATGGTGCTG
GTGATCGGCA TCGTGGTCGA TGATGCCATC GTGGTGGTCG AGAACGTCGA GCGCATCATG
AGCGAGGAAG GCCTGGCGCC GCTCGAAGCC ACGCGCAAGG CGATGGGCCA GATTTCGGGC
GCCATCATCG GCGTGACCGT GGTCTTGATC TCGGTGTTCG TGCCGCTGGC CTTCTTTGCC
GGCTCGGTGG GCAACATCTA CCGCCAGTTC TCCGCCGTCA TGGTCGCGTC GATTGGCTTT
TCGGCGTTTC TGGCGTTGTC GCTGACGCCG GCGCTGTGCG CCACGCTGCT CAAGCCCGTC
GAAGCCGGCC ACCACCATGA AAAAACCGGC TTTTTCGGCT GGTTCAACCG GGGCTTTTCG
CGCACCGCCA AGGGTTACGA AGGCCTGGTG GCGCGCCTGC TCAAGCGCGC CGGGCGCTAT
CTGGTGATTT ATGCGGCCAT CATTGGCGTG GTGGCGCTGG TCTATACGCG CCTGCCGACG
TCCTTTTTGC CGGCCGAAGA CCAGGGCAAT CTGCTGGTGA ATGTGCAACT GCCACCGGGC
GCCACGGTCG AGCGCACCCG CGCCGTGATG GAGCAGGTCG AGGGCTTCAT GCTCAAGCAG
CCCGAAGTGC AGAGCATGGT TGGCGTGCTG GGCTTCAGCT TTTCGGGCCA GGGCCAGAAC
GCCGGCCTGG CCTTCGTCAC GCTCAAGGAC TGGGACGAGC GCAAGGAAAA AGGCCAGCAG
GCCGACGCGC TGGCCGGACG CGCCTTTGGC GCCTTCTCGG GCATCCGCGA TGCGTTTGTG
TTTCCGCTGA GCCCGCCGCC CATTCCCGAA CTGGGCTCGT CCAGCGGCTT TACCTTCCGC
CTGCAGGACC GCGCCGGGGC GGGCAGCGAG GCGCTCTTGG CTGCGCGCAA CCAGTTGCTG
GGCATGGCGG GCAAGAGCAA GGTGCTGACG CAGGTGCGGC CCGACGGGCT CGAAGACGCG
CCGCAGCTGC AGATCGATAT TGACCGCGAC AAGGCCAATG CGCTGGGCGT GACCTTCGAT
GCCATCAATG CAGCGCTGTC CACGTCGCTC GGTTCGAGCT ATGTCAACGA CTTCCCGAAC
CAGGGCCGCC TGCAGCGCGT TGTGGTGCAG GCCGATGCGC CAGCGCGCAT GCAGCCCGAC
GACCTGATGA AAATCAACGC CAGCAACACC AAAGGCGAGT CCGTGCCGCT GTCGGCTTTT
GCCACCACGC GCTGGATTAA GGGCGCGATG CAGACCGTGC GCTACAACGG CTACTCCGCC
ATGCGCATCA GCGGCTCGGC CGCCCCCGGC TACAGCACCG GAGCGGCGAT GGCCGAGATG
GAAAAGCTCG CCGCCCAGCT GCCGCAGGGT TTCGGCTACG AGTGGACCGG CCAGTCGCGC
GAAGAAAAGC AGGCCGGCTC GCAAGCCATG ATCCTGTACG GCTTTGCGAT TCTGGCGGTG
TTTTTGTGCC TGGCCGCGCT GTATGAAAGC TGGTCGATTC CGCTGGCGGT GATTTTGGTC
GTGCCGCTGG GCGTGGTCGG CGTGCTGCTG GCAACGCTGC TGCGCAGCTA TGCCAACGAC
GTGTATTTCC AGGTCGGCCT GATCACCATC ATCGGCCTGT CGGCGAAAAA CGCGATTCTG
ATCATCGAGT TCGCCAAGGA CTTGCAGGCG CAGGGCAAGG GCGTGATCGA GTCGGCGCTG
ACCGCCGCGC ACCTGCGGTT TCGGCCCATC ATCATGACCT CGTTTGCCTT CATGCTGGGC
GTGCTGCCGC TGGCGATTGC CACGGGCGCG AGTTCGGCCA GCCAGCGGGC CATCGGCACC
GGCGTGATCG GCGGGATGAT CACCGGCACG GTGCTGGCGG TGTTTTTTGT ACCGATTTTC
TTTGTCGTGG TGCGCGGTTT CTTCAAGGGC AGCGAGCGGC AGCGGCAAAT TTACGCCGAG
CATGCCAAGG CGGCAGGCGT GGGCGGACAA GAAGGAGCAG CAGTTCATGA ATAA
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| Protein sequence | MAKFFIERPI FAWVIALFIL VMGSVAITQL PISQYPPVAP PSIVVTASYP GASARTLEDS
VLSVIEREMN GSPGLIYMES VAQANGSGTL TLTFETGTNP DLAQVDVQNR LSRASPRLPQ
AVTQQGVRVD KSRSNFLLFT MLSSDNPAID PIALGDYASR NVIPELQRLP GIGQAQLFGT
ERAMRIWIDP AKLTGFALSS LDVTRAIAAQ NAQIASGTIG DLPNVAGQGI AATVVVNGQL
SSVEQFGNIV LRAATDGSTV RLKDVARIEL GAQTYATSAR LNGKPATGIG LQLAPSGNAL
GAAKAVRAKM EQLKPYFPQG VSYSIPYDSS RFVSISIKQV AETLVEAVVL VFLVMFLFLQ
NWRYTVIPTI VVPIALLGTF ATLLALGFSI NVLTMFGMVL VIGIVVDDAI VVVENVERIM
SEEGLAPLEA TRKAMGQISG AIIGVTVVLI SVFVPLAFFA GSVGNIYRQF SAVMVASIGF
SAFLALSLTP ALCATLLKPV EAGHHHEKTG FFGWFNRGFS RTAKGYEGLV ARLLKRAGRY
LVIYAAIIGV VALVYTRLPT SFLPAEDQGN LLVNVQLPPG ATVERTRAVM EQVEGFMLKQ
PEVQSMVGVL GFSFSGQGQN AGLAFVTLKD WDERKEKGQQ ADALAGRAFG AFSGIRDAFV
FPLSPPPIPE LGSSSGFTFR LQDRAGAGSE ALLAARNQLL GMAGKSKVLT QVRPDGLEDA
PQLQIDIDRD KANALGVTFD AINAALSTSL GSSYVNDFPN QGRLQRVVVQ ADAPARMQPD
DLMKINASNT KGESVPLSAF ATTRWIKGAM QTVRYNGYSA MRISGSAAPG YSTGAAMAEM
EKLAAQLPQG FGYEWTGQSR EEKQAGSQAM ILYGFAILAV FLCLAALYES WSIPLAVILV
VPLGVVGVLL ATLLRSYAND VYFQVGLITI IGLSAKNAIL IIEFAKDLQA QGKGVIESAL
TAAHLRFRPI IMTSFAFMLG VLPLAIATGA SSASQRAIGT GVIGGMITGT VLAVFFVPIF
FVVVRGFFKG SERQRQIYAE HAKAAGVGGQ EGAAVHE
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