| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2877 |
|---|
| Symbol | |
|---|
| ID | 4686715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3023247 |
|---|
| End bp | 3024941 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639835883 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_983097 |
|---|
| Protein GI | 121605768 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.420141 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCA AAGTCATCGC CATCAACCGC CGCTCGGCCA ACATCACCGA GGGCAAGTCG
CGCGCGCCCA ACCGCTCCAT GTACTACGCC ATGGGCTACG AGGAAAGCGA TTTCAAGAAA
CCCATGATCG GCGTGGCCAA CGGCCACAGC ACCATCACGC CGTGCAACAG CGGCCTGCAA
AAGCTGGCGG ACGCGGCGAT TGACGCGATT GAGGAAGCCG GCGGCAATGC GCAGGTGTTC
GGCACGCCGA CGATTTCGGA CGGCATGGCC ATGGGCACCG AAGGCATGAA GTATTCGCTG
GTCAGCCGCG AAGTCATTTC GGACTGCATC GAAACCTGCG TGCAGGGCCA GTGGATGGAC
GGCGTGCTGG TGGTCGGCGG CTGCGACAAG AACATGCCCG GCGGCCTGAT GGGCATGCTG
CGCGCCAACG TGCCGGCGAT TTTTGTCTAT GGCGGCACGA TCTTGCCAGG CCATTACCAG
GGCAAAGACC TGAACATCGT CAGCGTGTTC GAAGCCGTCG GTGAAAACGC CGCCGGCCGC
ATGAGCGACG AAGACCTGCT GCAGATTGAG CGTCGCGCCA TTCCCGGCAC CGGCAGCTGC
GGCGGCATGT ACACCGCCAA CACCATGTCC AGCGCCTTCG AGGCCCTGGG CATTTCGCTG
CCCTACTCCA GCACCATGGC CAATCCGCAT GACGAAAAGC TGAACTCGGC GAAGGAATCG
GCCCGGGTGC TGATCGAAGC GGTCAAGAAA GACATCAAGC CGCGCGACAT CGTCACCAAG
AAATCCATTG AAAACGCCGT GGCCGTCATC ATGGCCACCG GCGGCTCGAC CAATGCCGTG
CTGCATTTCC TGGCCATCGC CCATGCGGCC GGCGTCGAAT GGACGATTGA CGACTTCGAG
CGCGTGCGCC AGAAAACCCC GGTGCTGTGC AACCTGAAAC CCTCGGGCCA GTACCTGGCG
GTGGACCTGC ACCAGGCCGG CGGCATTCCG CAGGTCATGA AAATGCTGCT GGTCGCCGGC
CTGCTGCATG GCGACTGCAT CACCATTTCG GGCCAGACCA TTGCCGAAGT GCTTGCGGAC
GTGCCCGATG CGCCGCGCGC CGGCCAGGAC GTGATCCGCC CCATCGACCA GCCGATGTAT
GCGCAGGGCC ACCTGGCCAT CCTCAAGGGC AACCTCTCGC CCGAAGGCTG CGTGGCCAAG
ATCACCGGCT TGAAGAACCC GGTCATGACC GGCCCGGCCC GGGTGTTTGA GGACGAGCAG
TCCGGCCTGA AGGCGATTCT GGACGGCAAG ATCGTGGCCG GTGACGTGAT GGTGCTGCGC
TACCTCGGCC CCAAGGGCGG TCCCGGCATG CCTGAAATGC TGGCCCCGAC CGGCGCGCTG
ATTGGCGCCG GCCTGGGCGA GAGCGTCGGC CTGATCACCG ACGGGCGCTT TTCCGGCGGC
ACCTGGGGCA TGGTGGTCGG CCATGTGGCG CCGGAAGCGG CGGCCGGCGG CAATATCGCC
TTCATCGAGG AAGGCGACTC GATCACGATT GACGCCAATC AGCTGCTGCT GCAACTGAAC
ATCAGCGACG CCGAGCTTGA AAGCCGCAAG GTCGGCTGGA CGGCCCCGGC CCCGCGTTAC
ACCCGTGGCG TGCAGGCCAA GTTCGCCTTC AATGCCTCCA GCGCCAGCAA GGGCGCGGTG
CTTGATGACT ATTGA
|
|---|
| Protein sequence | METKVIAINR RSANITEGKS RAPNRSMYYA MGYEESDFKK PMIGVANGHS TITPCNSGLQ
KLADAAIDAI EEAGGNAQVF GTPTISDGMA MGTEGMKYSL VSREVISDCI ETCVQGQWMD
GVLVVGGCDK NMPGGLMGML RANVPAIFVY GGTILPGHYQ GKDLNIVSVF EAVGENAAGR
MSDEDLLQIE RRAIPGTGSC GGMYTANTMS SAFEALGISL PYSSTMANPH DEKLNSAKES
ARVLIEAVKK DIKPRDIVTK KSIENAVAVI MATGGSTNAV LHFLAIAHAA GVEWTIDDFE
RVRQKTPVLC NLKPSGQYLA VDLHQAGGIP QVMKMLLVAG LLHGDCITIS GQTIAEVLAD
VPDAPRAGQD VIRPIDQPMY AQGHLAILKG NLSPEGCVAK ITGLKNPVMT GPARVFEDEQ
SGLKAILDGK IVAGDVMVLR YLGPKGGPGM PEMLAPTGAL IGAGLGESVG LITDGRFSGG
TWGMVVGHVA PEAAAGGNIA FIEEGDSITI DANQLLLQLN ISDAELESRK VGWTAPAPRY
TRGVQAKFAF NASSASKGAV LDDY
|
|---|
| |