| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2830 |
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| Symbol | |
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| ID | 4686921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2974594 |
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| End bp | 2975961 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639835838 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_983053 |
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| Protein GI | 121605724 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0538261 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00247347 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAGCAAC ACCATTTTCT GGCCGCCGCC CTGACGCTGT GCGTTTTTTC AGCCCAGGCC
ACCGACCTGA TGCAAGCCTG GCAGGCGGCG CGCCTGCATG ACCCGCAAGC CGCCGTGGCC
GACGCCGCCC GCGCCGCCGG CGAAACCCGC CGCGCGCAGG CGGCCGCGCT GTGGCGGCCG
GCGGTGACGC TCAGCGCCGG CGCAGGCCGC ATGAGTGCCG ACACGGCCAT GAATGGCGCG
CAGTTTTCCG CGCCCGGCTT TGGCCAGTCG AACGGCGTGT CGTTCGGCAC TTCGGTCAAC
AACGGCAATT CCACCAGCTG GAGCCTGAGC GCCCGCCAGC CGCTGTACAA CCGCGAGCGT
AGCGCCCAGC GCCAGCAGCT GGAGATTGGC GCCGACGCAG CCGGCCTGCA ATGGCAGGCG
GCGCAGCAGG ACTTGATGCT GCGTACCACC CAGCGCTATT TCGACGTGGT GCTGGCCGAG
CGCAAGCTGG CCCTGCTGCG CCAGCAACAG GCGGCCGTGG ACCGCGCCTT CACGGAGGCC
AAGGACCGGT TTGAACTGGG CGATGCGCCC ATCACCGACA CCCACGAAGC ATCGGCCCGG
GCGCGCGGCC TGCAGGCGCA GGTGCTGGCC GCCCAAAGCG AGCTGGAACT GGCCCAAACC
ATTCTGGCCG ACGCCACCGG CCTGCCGCCC GATGCGCTGC AGTTGCTGCC TCCCGCCGGC
GAGGTGGCGC CGGCCGACCT GCCGCCGCTG GCGCAGTGGC TGGCCCTGGC GCAGGAAAAC
AACCCGCTGC TGCGCCTGCA AAAGGCCAAC GCCGACTCCG CCCGCCAGGA AATCCGCAAG
CACGGCGCCC TGGCGGCGCC CACGCTGGAC CTGGTGGCGC AGGCTGGACG CGAGCGCCTG
AGCGGCAGCG GCGACTTCGG CGCGGCCAGC AACACTTCGC GCCAGCAGAT GATCGGCCTG
CAACTCAACG TGCCGCTCTA CACCGGCGGC ATGCGCAGCG CCAAGCTGGA CGAAGCCCTG
CGGCTCGAAG ACAAGGCGCG CGCCGAAGTC GAACAGGCCA GCCAGCAAAC CAATCAGCAA
ACCCGCGCCG CTTGGCTGGG GCTGCAGACC GGACAGGCCC GCTTGAGCGC GCTGGCCCAC
GCCGTGACCG CCAGCCAGGC CCGGCTCGAC GCCACCCGGC TGGGCCGGCA GGTGGGCGAC
CGCACCACGC TGGATTTGCT GAATGCCGAA AACGACGCCA GCGCCGCCGA CCTGGCGCTG
CTGCAGGCGC GCATCGAGGT GCTGCACAAC CGCTTGCGCC TGCAGGCGCT GGCCGGCCAG
CTCGACGAAA CACGGCTACA GACCGTGAAC GCGCTGCTCG GGCACTGA
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| Protein sequence | MKQHHFLAAA LTLCVFSAQA TDLMQAWQAA RLHDPQAAVA DAARAAGETR RAQAAALWRP
AVTLSAGAGR MSADTAMNGA QFSAPGFGQS NGVSFGTSVN NGNSTSWSLS ARQPLYNRER
SAQRQQLEIG ADAAGLQWQA AQQDLMLRTT QRYFDVVLAE RKLALLRQQQ AAVDRAFTEA
KDRFELGDAP ITDTHEASAR ARGLQAQVLA AQSELELAQT ILADATGLPP DALQLLPPAG
EVAPADLPPL AQWLALAQEN NPLLRLQKAN ADSARQEIRK HGALAAPTLD LVAQAGRERL
SGSGDFGAAS NTSRQQMIGL QLNVPLYTGG MRSAKLDEAL RLEDKARAEV EQASQQTNQQ
TRAAWLGLQT GQARLSALAH AVTASQARLD ATRLGRQVGD RTTLDLLNAE NDASAADLAL
LQARIEVLHN RLRLQALAGQ LDETRLQTVN ALLGH
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