| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2827 |
|---|
| Symbol | |
|---|
| ID | 4686882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2970068 |
|---|
| End bp | 2971126 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639835835 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_983050 |
|---|
| Protein GI | 121605721 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00918161 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00100699 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGAA AAAGTCTTGT AGCCATAGCA ACCCTGACCA GCTTGTTGAT CTGCGCGCCT
GCCTGGGCGG CTGAAAACAG CCCGCTCACC ACGGTGGTGG TTCAGGCCTC TGGCAATAGC
GCGGCCGACA GCATCAGCCT GGATGCCGTG GTGGAGGCGG TGCGCCAGAC CACTCTGTCA
GCCCAGGTGC CCGGCGCCAT CGTGTCGCTT CGGGTCAAGG CCGGCGACAG CGTGAAGGCC
GGCCAGGAAC TGCTGCGGAT AGATGCCCGC TCTGCCAGCC AGAATGCTGC CGCCAGCGAT
GCCCAGGTGC AAGCCGCGCA GGCAAGCCTG AATGTGGCCA GTAAAGACTA TGAACGGCAA
AAGCAGCTGT TCCAGAAGCA GTACATCAGC CAGTCGGCGC TCGACCGGGC GCAGGCCCAG
TGGCAGGCGA CGCAGGCCCA GGTCAGGGCG CTGCAGGCGC AGGCCGGCGT GGCCCGGACC
CAGTCGGGGT TTTTTGTGGT CAACGCGCCC TATGCCGGGG TGGTCAGCGA CGTTCCCGTG
ACCTTGGGCG ACATGGCCAT GCCCGGCCGC GCACTGCTCA CGATGCATGA CCCGTCAGAG
TTGCGGGTGA CGGCCGCCGT GCCGCAAAGC GCCATCGCCG GCCTGGGCGA CACCAGCGCC
GTGCGGTTTG AGTTGCCCGG CCTGGCCACC GGCCTGCTGC GTCCCACGCA GGTGCAGGTG
TTGCCGGTGG TGGATGCCGC CACGCACACC GCCCAGGTCC GGTTGGGTCT GCCCGCTGGC
ATCAAGGGCG TGGCGCCCGG CGCCTTTGCC CGCATCTGGC TGCCGCTGGG GGCCGGCGAC
AGCGCTCTGG GCAAAGGCCA GCGCCTGTAT GTGCCAGCGC GCGCGGTGGT CAGGCGCTCG
GAAATGACCG GGCTGTATGT GCTCAATCCC GAGGGGCTTG CCTTGCTGCG CCAGGTGCGG
CTGGGCGGCA CGAAGGGCGA ACTGGTGGAA GTATTGAGCG GCGTCAGCCC CGGCGACAAG
GTGGTGCTGG AGCCGCAAAC CGCCGCACGG GTGCGCTGA
|
|---|
| Protein sequence | MSRKSLVAIA TLTSLLICAP AWAAENSPLT TVVVQASGNS AADSISLDAV VEAVRQTTLS
AQVPGAIVSL RVKAGDSVKA GQELLRIDAR SASQNAAASD AQVQAAQASL NVASKDYERQ
KQLFQKQYIS QSALDRAQAQ WQATQAQVRA LQAQAGVART QSGFFVVNAP YAGVVSDVPV
TLGDMAMPGR ALLTMHDPSE LRVTAAVPQS AIAGLGDTSA VRFELPGLAT GLLRPTQVQV
LPVVDAATHT AQVRLGLPAG IKGVAPGAFA RIWLPLGAGD SALGKGQRLY VPARAVVRRS
EMTGLYVLNP EGLALLRQVR LGGTKGELVE VLSGVSPGDK VVLEPQTAAR VR
|
|---|
| |