Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2820 |
Symbol | |
ID | 4686865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 2962333 |
End bp | 2963691 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639835828 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_983043 |
Protein GI | 121605714 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.287176 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000171057 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAGCCAT TACCCGAATT GATGTCCTAC CTGGAGGGCT TGAGCGAGCC GCATATCCTG TTCGACACCC AATACCGCAT CCTGGCGGCC AACGCGGCTT ACCGGCAGCA GTTCAGCCCG GTGCAAAGCG TGGTGGGGCG CACCTGCTAT GAGGTGTCGC ACCACTTCAA CGTGCCGTGT GACCAGGCCG GCGAGTCATG CCCACTGGCC CAATCGCGCG CGTCGGGGCA GCGTGAGCGG GTGCTGCACC TGCACCACAC GCCCAAGGGT GAGGAGTACG TCAACATCGA GCTGGCCCCG CTGCTGGACG CCCATGGCGA ACAGGCTTTT TTCGTCGAGA AGATGGAGCG TCTGCGGGTG GCACAGGGTC AGCCGGCAGC CCAGGGCCTG ATTGGGCGGG CGCCTGCCTT TCAGCACATG CTGGCGCTCG TGGCGCGCGT TGCGCCCTCG CAGGCCACTG TGCTGCTGCT GGGAGAGTCC GGTACCGGCA AGGAACTGGT CGCCCAGGCG ATCCACGAGG CCAGCCCGCG CGCGCAGCGT GCGCTGGTGG CGGTGGATTG CTCAAGCTTG CCGGAAAACC TGTTTGAGTC CGAGTTGTTT GGCCACGAGC GGGGCGCTTT CACCGGTGCC AGCACCGCCC GGGGCGGTCT GATCGAGGCG GCCAGTGGCG GCACCCTGTT CCTGGACGAG GTGGGCGATA TTCCACTCAT CATGCAAGTC AAGCTGCTGC GTTTGCTGGA AACCGGCACC TACCGCCGCG TGGGCAGCAC TGAGCTGCGC CATGCCGACA TCCGCGTGGT TTCGGCCACC CATCGCGACC TGGACCGCAT GGTGTCCCAG GAGCTGTTTC GTGAAGACCT GTACTACCGC CTGAGCACGT TTCCGATTCA CCTGCCCGCC TTGCGCGAAC GAAGGGACGA CATCGTCCTG CTGGCAGCCG CCTTGCTGGA GCGCGTGGCC CCTCAGCGCA AGCTGCGCAT CAGCGAGCCC GCACTGCGCT TGCTGCAGGC GCAGGATTAC CCGGGCAATG TCAGGGAACT GCGAAACCTG CTGGAACGTG CGGCGCTGCT GTGCGATGGC AATACGGTCG AAGCCAGCCA TATCCAGCAG GCCCTGTCGT CGGGAAGACG CCCGTCGGCC GGGCCGCGTG TCCATCCGCA AGCTTGCGAT GCCGGCATCA CCGACACTGC CGTCAGCAGC CTGAAGGGCT TGACCCTGGC GCCAGGCGCT CTTAGAACCA TCGAACGCGC TGCGCTGCAG CAATTGGTCA GCGGCCACCG GGGAAGCCGG GCGGATTTGG CGAATAAGCT GGGCATCAGC GAACGCTCCC TTTACCGCAA ACTCAAGGCG CTGGAATAA
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Protein sequence | MKPLPELMSY LEGLSEPHIL FDTQYRILAA NAAYRQQFSP VQSVVGRTCY EVSHHFNVPC DQAGESCPLA QSRASGQRER VLHLHHTPKG EEYVNIELAP LLDAHGEQAF FVEKMERLRV AQGQPAAQGL IGRAPAFQHM LALVARVAPS QATVLLLGES GTGKELVAQA IHEASPRAQR ALVAVDCSSL PENLFESELF GHERGAFTGA STARGGLIEA ASGGTLFLDE VGDIPLIMQV KLLRLLETGT YRRVGSTELR HADIRVVSAT HRDLDRMVSQ ELFREDLYYR LSTFPIHLPA LRERRDDIVL LAAALLERVA PQRKLRISEP ALRLLQAQDY PGNVRELRNL LERAALLCDG NTVEASHIQQ ALSSGRRPSA GPRVHPQACD AGITDTAVSS LKGLTLAPGA LRTIERAALQ QLVSGHRGSR ADLANKLGIS ERSLYRKLKA LE
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