Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2796 |
Symbol | rpsA |
ID | 4687706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 2941847 |
End bp | 2943532 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639835804 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_983019 |
Protein GI | 121605690 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.355849 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000269522 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCTGAAT CTTTTGCCGA CCTGTTTAAC GAATCACTTG AACGCTCTGA AATGCGCTCC GGTGAAGTCA TCACCGCTGA AGTAGTGCGC ATTGATCACA ACCACGTGGT TGTGAACGCC GGCCTCAAGT CCGAGGCTTA CATTCCTCTT GAAGAATTCA AGAACGACCA GGGCGAAGTT GAAGTCCAGG TCGGCGACTT TGTGTCCGTC GCCATCGACT CCGTCGAAAA CGGCTACGGC GACACCCTGC TCTCGCGTGA CAAGGCCAAG CGCCTGGCAT CGTGGATGAG CCTGGAAAAG GCCCTGGAAT CCGGCGAATT CGTCACCGGC CAGACCAGCG GCAAGGTCAA GGGCGGCCTG ACCGTTCTGG TCAACGGCAT CCGCGCTTTC CTGCCCGGCT CGCTGATCGA CACCCGCCCC ATCAAGGACT TGTCTCCGTA CGAGAACAAG ACCATGGAAT TCAAGGTCAT CAAGCTCGAC CGCAAGCGCA ACAACGTCGT GTTGTCGCGT CGCGCCGTGG TCGAAGCCAG CATGGGCGAA GAACGCGCCA AGCTGATGGA AACCCTGAAG GAAGGCTCCG CCGTCAAGGG CATCGTCAAG AACATCACCG AATACGGTGC ATTCGTTGAC CTGGGCGGCA TTGATGGCTT GCTGCACATC ACCGACATGG CATGGCGCCG CGTGCGTCAC CCAAGCGAAG TGGTGACGGC TGGCCAGGAA ATCGTGGCCA AGATCCTGAA GTTCGACACC GAGAAAAACC GCGTGTCGCT GGGTCTGAAG CAAATGGGTG ACGACCCATG GATGGGCGTG AACCGCCGCT ATCCGCAAAG CACCCGCCTG TTCGGCAAGA TCACCAACAT TGCCGACTAC GGCGCGTTCG TGGAACTCGA ACCCGGCATC GAAGGCCTGG TCCACGTGTC CGAGATGGAC TGGACGAACA AGAATGTTGC GCCTAGCAAG CTCGTGGCCC TGGGCGACGA AGTCGAAGTC ATGGTTCTTG AAATCGACGA AGACAAGCGC CGCATCAGCC TGGGCATGAA GCAGTGCAAG GCCAATCCAT GGCAGGAATT TGCCGTGGAA ACCAAGCGCG GCGACCGCGT CAAGGGCCCG ATCAAGTCGA TCACCGACTT CGGCGTGTTT GTGGGCCTGG CTGCCGGCAT CGACGGCCTG GTGCACTTGT CTGACCTCTC GTGGAACGAG CCCGGCGAAG CCGCAGTTCG CAACTACAAA AAGGGCCAGG AAGTAGAAGC GATTGTGCTG GCCGTCGATG TGGACCGCGA GCGTATCTCC CTGGGCATCA AGCAGCTTGA CTCCGATCCG TTCACCACGT TCGTGTCGAT CAACGACAAG GGCGCGATTG TGACCGGCAA GGTCAAGACG GTCGATGCCA AGGGCGCCGA AATCGATCTG GGCGAAGACA TCATTGGCTA CCTGCGTGCC AGCGAAATCA GCCGTGACCG CGTTGAAGAT GCGCGCAATG TGCTGAAAGA AGGCGACGAA GTGTCGGCTG TCGTGGTGAA CGTGGATCGC AAGACCCGCA ACATCCAGCT GTCGGTCAAA GCCAAGGACA ACGCCGACCA GCAAGAAGCC ATGGCTTCCC TCAGCCAGCA GTCCTCGCGC GAAAGCGCCG GCCTGACCAG CCTGGGTGCC CTGCTGCGCG CCAAGCTGGA CAACAGCGAC AAGTAA
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Protein sequence | MSESFADLFN ESLERSEMRS GEVITAEVVR IDHNHVVVNA GLKSEAYIPL EEFKNDQGEV EVQVGDFVSV AIDSVENGYG DTLLSRDKAK RLASWMSLEK ALESGEFVTG QTSGKVKGGL TVLVNGIRAF LPGSLIDTRP IKDLSPYENK TMEFKVIKLD RKRNNVVLSR RAVVEASMGE ERAKLMETLK EGSAVKGIVK NITEYGAFVD LGGIDGLLHI TDMAWRRVRH PSEVVTAGQE IVAKILKFDT EKNRVSLGLK QMGDDPWMGV NRRYPQSTRL FGKITNIADY GAFVELEPGI EGLVHVSEMD WTNKNVAPSK LVALGDEVEV MVLEIDEDKR RISLGMKQCK ANPWQEFAVE TKRGDRVKGP IKSITDFGVF VGLAAGIDGL VHLSDLSWNE PGEAAVRNYK KGQEVEAIVL AVDVDRERIS LGIKQLDSDP FTTFVSINDK GAIVTGKVKT VDAKGAEIDL GEDIIGYLRA SEISRDRVED ARNVLKEGDE VSAVVVNVDR KTRNIQLSVK AKDNADQQEA MASLSQQSSR ESAGLTSLGA LLRAKLDNSD K
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