| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2784 |
|---|
| Symbol | |
|---|
| ID | 4687614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2927705 |
|---|
| End bp | 2928586 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639835792 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_983007 |
|---|
| Protein GI | 121605678 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.863394 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00301468 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCTG GACGCTCGAT CACTCACCGC GCTAGACTGG CCTCATTTGC TATTTTATTA
ATAGCTAATT GCGCTTATGC AGCAAGCGCA AATGGTCAAT TTGATGCAAA AAATCCAGCT
GAAAGTGCTT CCTGCAAGCC GGTGTACCTG ACGCTGGACA CCGGCCACAT GGAAGTGGCG
CCGCTGATCG CCGACGTGCT CAAGCGCCAT CAGGTCAAGG TCACCTTTTT TGCCGCCAAC
GAGCGCACCA AAACCGGCGA CGGCAGCCTG GGAACGCACT GGGCCGGCTG GTGGAAGGCG
CGCGCTGCCG AAGGCCACGA GTTTGCCTCG CACACGTTCG ACCACACCTA CTGGCGCGCC
GACGTGCCGG GTGCAGCGGG GGCGCCGATG CAATTCAGGG TGCGCCCGTC GGCCGGCCCT
TCCGAGGGCA GGGAAGTCAC CTGGACGGCC CGGCAATACT GTGAGGAAAT CGGCCGCGCC
AGCACGCGCC TGCAGGAAAT CACCGGCAAA AAACCGCTGC CGCTGTTCCG CGCGCCCGGC
GGTAAAACCT CGCCCCAGCT TCTGGCGGCG GCCCGATCGT GCGGCTATGC GCATGCGGGC
TGGTCGCCTG CCGGCTTTTT GGGTGACGAG TTGCCCAGCG ACAAATACCC CAACGATGCG
CTGCTGAACA AAGCGCTGCA GGGCATCCGC AGCGGTGATG TCCTGGTCGC GCATCTGGGC
ATCTGGTCGC GCAAGGAGCC GTGGGCGCCG GCCGTGCTGG AGCCCTTGAT CACCGGCTTG
CAGTCGCGCG GCTTCTGTTT TAAAACACTG CGTGAACATC CCGGCTACAA GGCCTGGATC
GAAGCGCAGT CGGGCGTTCC AAGCGTTCAA GCAGGGAAAT AG
|
|---|
| Protein sequence | MASGRSITHR ARLASFAILL IANCAYAASA NGQFDAKNPA ESASCKPVYL TLDTGHMEVA
PLIADVLKRH QVKVTFFAAN ERTKTGDGSL GTHWAGWWKA RAAEGHEFAS HTFDHTYWRA
DVPGAAGAPM QFRVRPSAGP SEGREVTWTA RQYCEEIGRA STRLQEITGK KPLPLFRAPG
GKTSPQLLAA ARSCGYAHAG WSPAGFLGDE LPSDKYPNDA LLNKALQGIR SGDVLVAHLG
IWSRKEPWAP AVLEPLITGL QSRGFCFKTL REHPGYKAWI EAQSGVPSVQ AGK
|
|---|
| |