| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2730 |
|---|
| Symbol | |
|---|
| ID | 4688368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2875700 |
|---|
| End bp | 2876872 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639835738 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_982953 |
|---|
| Protein GI | 121605624 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0102883 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00729362 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAGC GCTTTTTCCT TCATGCCATC GCCCTGGCCA CCGTGGCCTT CACCGCCACG
GCCACCCTGG CGCAGGACAA CACCTTCAAG ATCGGGCTGA TCCTGCCGAT GACCGGCCAG
CAGGCCACCA CGGGCCGGCA GATCGAGGCC GCCGCGCGCC TGTACATGGC GCAAAACGGC
GACACCGTGG CCGGCAAGAA AATCCAGTTG ATCGTCAAGG ACGACACCTC GCTGCCCGAC
GCCACGCGCC GCCTGGCGCA GGAACTGGTG GTCAATGACA AGGTCAATGT GCTGGCCGGC
TTCGGCATCA CGCCCTCGGC GCTGGCCACC GCGCCGATTG CCACCCAGTC CAAGACGCCG
ATGGTGGTGA TGGCGGCGGC CACGTCGAGC ATCACGCAGG CCTCGCCCTA TATCGTGCGC
ACCAGCTTCA CGCTGCCCCA GGCATCTGTC GCGCTGGCCG ACTGGGCGCC GAAGAACGGC
ATCAAGAAGG TCGTCACGCT GGTGTCGGAC TACGGCCCCG GCATTGACGC CGAAAAGTAT
TTCAAGGAAC GCCTGATCTT CAACGGCGGC CAGGTGACTG AAGCGCTGCG GGTTCCGTTG
CGTGGCCCTG ACTTTGCGCC GTTTCTGCAG AAGGTTCGGG ATGCCAAGCC CGATGCGCTG
TTTGTGTTCG TGCCGTCGGG CGCGGGCGCG GCGGTGATGA AGCAATTTGC CGAGCGTGGC
CTGGACAAGG CCGGCATCAA GCTGATCGGC ACCGGCGACG TGACCGACGA CGACCAGCTC
AACGACATGG GCGATGTGGC GGTGGGCGTG GTCACCTCGC ACCATTATTC GGCGGCCCAT
CCGTCGGCCA TGAACAAGAA GTTTGTCGAG GCTTTTTCAA AAGCCAACAA GGGTTTGCGG
CCGAACTTCA TGGCCGTTGG CGGCTATGAC GGCATGCGCG TGATCTACGA AGCCCTGAAA
ACCAGCAAGG GCCAGGGCGG CGGCGATGCG CTGCTGGCCG GCATGAAGGG CCAGATTTTC
GAAAGCCCGC GCGGCAAGAT GTTCATCGAC GCGCAGACGC GCGATGTGGT GCAGGACATC
TATTTGCGCA AGGTCGAGAA GAAAGACGGC CAGCTCTACA ACGTGGAATT CGACGTGATC
AAGGACGTCA AGGATCCGGG CAAGGCCAAG TAA
|
|---|
| Protein sequence | MQKRFFLHAI ALATVAFTAT ATLAQDNTFK IGLILPMTGQ QATTGRQIEA AARLYMAQNG
DTVAGKKIQL IVKDDTSLPD ATRRLAQELV VNDKVNVLAG FGITPSALAT APIATQSKTP
MVVMAAATSS ITQASPYIVR TSFTLPQASV ALADWAPKNG IKKVVTLVSD YGPGIDAEKY
FKERLIFNGG QVTEALRVPL RGPDFAPFLQ KVRDAKPDAL FVFVPSGAGA AVMKQFAERG
LDKAGIKLIG TGDVTDDDQL NDMGDVAVGV VTSHHYSAAH PSAMNKKFVE AFSKANKGLR
PNFMAVGGYD GMRVIYEALK TSKGQGGGDA LLAGMKGQIF ESPRGKMFID AQTRDVVQDI
YLRKVEKKDG QLYNVEFDVI KDVKDPGKAK
|
|---|
| |