| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2702 |
|---|
| Symbol | |
|---|
| ID | 4689839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2848704 |
|---|
| End bp | 2849531 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639835710 |
|---|
| Product | xylose isomerase domain-containing protein |
|---|
| Protein accession | YP_982925 |
|---|
| Protein GI | 121605596 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.964957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGCA TCTACTCGCT GGCCTATCTC ACGTCGAACA CCTGCACGCC GCCGCAGGCC
GTGCGCCTGG CGGCGGAACT GGGTTACGCC TTTGTCGGCC TGCGCCTGCT GCCCAACGCG
GCGGGCGCGC CGCAGCAGTT TTTGATCGGC CAGCCCGAGG TGCTGCGCGA AACCGTGGCG
GCGCAGCGCG ACACCGGCGT CGGCATCTTC GACCTGGAAA TCATCCGCAT CGCCGAAGGT
TTTGATGCGC GCAGCTACCT GCCGCTGCTG GAAGCTGGTG CGGCGCTGAA AGCCAAGGCC
GTGCTGGTGG CCGGCGACGA CACCGACGAA GCCCGGTTGA CCGACGGCTA CGCGCGCCTG
TGCGAACTGA TGCAGCCCTA CGGCTTGACG GCCGACCTGG AATTCATGCC CTGGACCGCC
GTGCCCGACG CGAATGCCGC GCTGCGCATC ATCAATACCG CCGGGCGGCC CGCCAACGCC
GGCATCCTCG TCGATGCGCT GCACTTTGAT CGCTCCAGCA CCACGCTGGA CGACATCCGC
GCCATTCCGC GCGAACTGCT GCACTACGCC CAGATCTGCG ATGCGCCCAC CCGCGCGCAG
AGGGGCAGCG ACTTCACGGG GGAAGAAATG ATCCACGCCG CCCGCTGCGA ACGGCTCTTG
CCCGGCGAGG GCGGCATTGA CCTCAAAGGC CTGTTCGACG CCTTGCCGCA GGACCTGCCG
GTCAGCGTCG AAGTCGTCCA CCTGGAGCGC ATGGCGCAAC TCGGCCAGAC CGAATGGGCG
CGCCAGTGCC TGGCGGTCAG CCGCGCCTTT CTTGAGCCGC AAGCCTGA
|
|---|
| Protein sequence | MSRIYSLAYL TSNTCTPPQA VRLAAELGYA FVGLRLLPNA AGAPQQFLIG QPEVLRETVA
AQRDTGVGIF DLEIIRIAEG FDARSYLPLL EAGAALKAKA VLVAGDDTDE ARLTDGYARL
CELMQPYGLT ADLEFMPWTA VPDANAALRI INTAGRPANA GILVDALHFD RSSTTLDDIR
AIPRELLHYA QICDAPTRAQ RGSDFTGEEM IHAARCERLL PGEGGIDLKG LFDALPQDLP
VSVEVVHLER MAQLGQTEWA RQCLAVSRAF LEPQA
|
|---|
| |