| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2603 |
|---|
| Symbol | |
|---|
| ID | 4689249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2739467 |
|---|
| End bp | 2740474 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639835610 |
|---|
| Product | porin |
|---|
| Protein accession | YP_982826 |
|---|
| Protein GI | 121605497 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00285277 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA GTTTGATCGC CCTGGCCGTG GTGGCTGTCT CTGGCGCGGC GACGGCCCAA
TCCTCCGTGA CCTTGTACGG TATTGCCGAC GCTTCGTTCG GTGTCGTCAA GAACGGCTCC
GTGACGCAAA CGAAAGTTGA CAGTGGCCTG CTCAATACCA GCCGCTTTGG CTTCAAGGGA
ACGGAAGACC TGGGCGGTGG CCTGAAAGCC AGTTTCCTGC TGGAACAGGG CTTTAATGTT
GACAATGGCT CTTCCCTGGA AGACAGCCAG GACGGCCAGA CCAAGCTTAA CCAGATGTTC
AGCCGCAATG CCTATGTGGG CTTGTCGGGC GGTTTCGGCG AAGTGCGGCT GGGCAAGGTC
TGGTCGGCTT TCGATGAAAT GAAAGGCGCG TCCAACGCGG CCTGGGACTC GGGCCTGTCG
CCGAACAGCG GTGTTTTTTA TGGCGGAGCC ATTGGCGGCT ACACCTACAA CCCGCGTAAT
TCCGTGATCT ACTTTACGCC GAATGTGAGC GGTTTCAGCG GCGCGGCCAG CTACAGCATG
GGCGAAAACA AGACCGCCAC GGTCAATGCC GGCAGGGTTG CCGCCCTGAA TGTCAAATAC
GCCGGCGGTC CGCTGTATGT CGGCCTGGGC CATCAGACCG AACGGGTCAA CGGCTCGGTT
CCGACGAAAA AATTCACCAT GTTGAATGCC ACTTACGACT TTGGCATGGC CACGCTGCAG
GCCAGCGTTG GGCGTCAATC GCAGAATGAC TTGAAAACCC GCGACTGGAC GCTGGGCGCG
ACCGTTCCGG TGTCTGGCCT CCTGTCGGTC TCGGGTGGCG TCGCTGGCTC AACCGACAAT
GTCGCCGCCG GTGACATCAA GCGCAAGGGC GTCAGCCTGG CGGCCCAGTA TGCGCTGTCC
AAGCGTACGT TCCTGTACAC CGGCTACCAT GCCACCCGGA CCACCTACCC GGTCCTGCCG
CGCCTGAATA CCAGCCTCTA CGCCGTGGGC GTGAGCCACC TGTTCTAA
|
|---|
| Protein sequence | MKKSLIALAV VAVSGAATAQ SSVTLYGIAD ASFGVVKNGS VTQTKVDSGL LNTSRFGFKG
TEDLGGGLKA SFLLEQGFNV DNGSSLEDSQ DGQTKLNQMF SRNAYVGLSG GFGEVRLGKV
WSAFDEMKGA SNAAWDSGLS PNSGVFYGGA IGGYTYNPRN SVIYFTPNVS GFSGAASYSM
GENKTATVNA GRVAALNVKY AGGPLYVGLG HQTERVNGSV PTKKFTMLNA TYDFGMATLQ
ASVGRQSQND LKTRDWTLGA TVPVSGLLSV SGGVAGSTDN VAAGDIKRKG VSLAAQYALS
KRTFLYTGYH ATRTTYPVLP RLNTSLYAVG VSHLF
|
|---|
| |