| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2576 |
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| Symbol | rumA |
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| ID | 4688529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 2710747 |
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| End bp | 2712219 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639835584 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_982800 |
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| Protein GI | 121605471 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0817224 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000552894 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCGAAG AAACCCAGAC ACCGTCCCCA CCCGCACCCG CACCCGCACC CGCCGAGTAT
CCGATTGACT TGCTGACCGT CGAGTCTCTC GACATCGAAG CGCAGGGCAT TGCCCACCGC
GCCGATGGCA AGGTCGTGTT CATCGAAGGC GCGCTGCCTT TCGAGCAGGT CACCGCCAAC
GTGTACCGCA AGAAAAGCAG CTTTGAAAAA GCCACGCTGA CGGCGATCTA CCGCGAGTCG
TCGCAGCGCG TGACGCCTGC CTGCCCGCAC TTCGGCATGC ACACCGGCGC CTGCGGCGGC
TGCAAGATGC AGCACCTGCA CATCGGCGCG CAGGTCGCCG TCAAGCAGCG CGTGCTTGAA
GACAACCTGC GCTTCATCGG CAAGGTCAAG GCCGACAACC TGCTCAGGCC GATTGAAGGG
CCGGCCTGGC ATTACCGCTA CCGCGCGCGC CTGTCGGTGC GCTATGTGCG CAAGAAAGGC
ACAGCGCTGG TCGGTTTCCA TGAGCGCAAG AGCGCCTACG TGGCCGACAT GACCGAGTGC
CATGTGGTGC CGCAGCATGT CAGCGACATG CTGGTGCCGC TGCGCGGGCT GATCAGCAGC
ATGGACGCCC GGGAAACCAT CCCGCAGATC GAGCTGGCCT GCGGCGACGA CCTGACGGCG
ATGGTGCTGC GCCACATGGA GCCGCTCAGC GTGGCCGACC TGGCCCGGCT GCGCGCTTTT
GCCGCAGCTA ATGCGGGCCT GCAGTGGTGG GTTCAGTCCG GCGGGCTGGA CACCGTCAAG
CTGCTCGATG CGCAGGTCGC GGAGTTGAGC TACGGCCTGC CCGAGTTCGG TATCACCATG
CCGTTCAAGC CGACCGATTT CACCCAGGTC AACCCGCACA TCAACCAGGT GCTGGTGTCG
CGCGCGCTGC GCCTGCTGGG TGTGCAGCCG ACCGAGCGGG TGATCGACTG GTTTTGCGGC
CTGGGCAATT TCACGCTGCC GCTGGCGACC CGCGCGCGCG AGGTGCTGGG CATTGAAGGC
AGCGAGGTGC TGGTCGCCCG TTCACGCGAA AATTATGAAC GAAACAAGGC TTCATCGCAC
GTCCGGCCTG CGCTGGAAGC TACCAAGTTT GTAGCAAGAA ACCTGTTCGA AATGACCCCG
GCCATGCTGG TCAAAGACGG TGCGGCAGAA AAATGGCTGG TCGATCCGCC GCGCGAAGGC
GCGTTCGAGT TGTTCAAGTC GCTGGCCGCG CTGCACCAGC AAGTCGTGAC CGGCGTGCCG
TGCGACGACG GCATCCACCA GCAGAGCCTG GCGCTGGGCG GCTGGACGCC GCCTAGCCGT
ATCGTCTATG TGAGCTGCAA CCCGGCGACG CTGGCGCGCG ATGCGGGCGT GCTGGTCGAG
GGCGGCGGCT ACCGCTGCAC GGCGGCCGGC GTGGTCAACA TGTTCCCGCA CACCGCGCAT
GTCGAGTCGA TGGCGGTGTT CGAGCGGCTG TAG
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| Protein sequence | MIEETQTPSP PAPAPAPAEY PIDLLTVESL DIEAQGIAHR ADGKVVFIEG ALPFEQVTAN
VYRKKSSFEK ATLTAIYRES SQRVTPACPH FGMHTGACGG CKMQHLHIGA QVAVKQRVLE
DNLRFIGKVK ADNLLRPIEG PAWHYRYRAR LSVRYVRKKG TALVGFHERK SAYVADMTEC
HVVPQHVSDM LVPLRGLISS MDARETIPQI ELACGDDLTA MVLRHMEPLS VADLARLRAF
AAANAGLQWW VQSGGLDTVK LLDAQVAELS YGLPEFGITM PFKPTDFTQV NPHINQVLVS
RALRLLGVQP TERVIDWFCG LGNFTLPLAT RAREVLGIEG SEVLVARSRE NYERNKASSH
VRPALEATKF VARNLFEMTP AMLVKDGAAE KWLVDPPREG AFELFKSLAA LHQQVVTGVP
CDDGIHQQSL ALGGWTPPSR IVYVSCNPAT LARDAGVLVE GGGYRCTAAG VVNMFPHTAH
VESMAVFERL
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