Gene Pnap_2570 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2570 
Symbol 
ID4688146 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2707397 
End bp2707807 
Gene Length411 bp 
Protein Length136 aa 
Translation table11 
GC content63% 
IMG OID639835578 
Productbiopolymer transport protein ExbD/TolR 
Protein accessionYP_982794 
Protein GI121605465 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00988954 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000963498 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCTTCG GAACCCAGGA CGACACCGAT GAGGTGATGA ACGAGATCAA CATGACGCCG 
CTGGTCGATG TCATGCTGGT GCTGCTGATC ATCTTCATCA TCACCGTGCC GGTCATGAAG
CATTCCGTCA ACATCGACCT GCCGCGCGCC AGCAACGAGC AGCAGCTCAT CAAGCCGGAA
ACGGTCCGGC TCAGCGTCGA TGCCGATGGC AGCTATTACT TCAACGACGT GAAAATCACC
GACGAGGAAC TGGCGCCCCG GCTGAAAGCG GCGGCCGCCC AGGAGCCGCA GCCCGACCTG
CACATCCGGG GCGACAAGGC CGTTCGCTAC GAGCGCGTGG CGCAGGCCAT GGCGGCGGCG
CAACAGGCCG GCGTGCGCAA GATCGGCTTC ATCACCGAAC CGAAGAACTG A
 
Protein sequence
MAFGTQDDTD EVMNEINMTP LVDVMLVLLI IFIITVPVMK HSVNIDLPRA SNEQQLIKPE 
TVRLSVDADG SYYFNDVKIT DEELAPRLKA AAAQEPQPDL HIRGDKAVRY ERVAQAMAAA
QQAGVRKIGF ITEPKN