Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2550 |
Symbol | |
ID | 4687000 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 2687152 |
End bp | 2690637 |
Gene Length | 3486 bp |
Protein Length | 1161 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639835558 |
Product | transcription-repair coupling factor |
Protein accession | YP_982774 |
Protein GI | 121605445 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.277957 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0823791 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACCTTC CTCTACTCGC GACCGGCAAA CGCTACACCC TGCCCCAGCC CACGGGTTCC GCCGACGCCC TGCTGCTGGC CCGCTTGGGG CAGCGCGAAA AAGCCGCCGG CAAACTCACC GCCATCGTCA CCTCGGACGC CAGCACGGCC CAGCGCCTGA TGGACGAGAT GGCGTTTTTT GCGCCCGACC TGCGCTGCGC GCTGTTTCCC GACTGGGAAA CGCTGCCCTA CGACGCGTTT TCGCCGCACC AGGATTTGAT CAGCGAACGG CTGGCCACGC TGTGGCGCAT CCAGCAGCGC GACAAGGAAA CCGGCGCCGA CGTGGTCATC GTGCCGGCCA CCACCGCGCT GTACCGGCTG GCGCCGCCGT CTTTCCTGGC CGGCTACACG TTTGAATTCA AGGTCAGGCA AAAGCTCGAT GAAACCCGGC TGAAGGCCCA GCTCACGCTG GCGGGCTACA GCCATGTGAC GCAGGTCGTC AGCCCCGGCG AATACGCGGT GCGCGGCGGC CTGATCGACC TGTTCCCGAT GGGCTCGCTG GTGCCTTACC GCGTCGATCT GTTCGATGAC GAAATCGACA GCATCCGCAC TTTTGACCCG GACAGCCAGC GCAGCCTCTA CCCGGTGCCC GAGGTGCGCT TGCTGCCGGG CCGCGAATTC CCGATGGACG ACGATGCGCG CGCCAAATTC CGCAAGCGCT GGCGCGAACT GCTCGACGGC GACCCGACCA AGAGCCGCAT CTACAAGGAC ATGGGCAACG GCGTGGCGAC GGCAGGCATC GAGTACTACC TGCCGCTGTT CTTCGAAGAA ACCGCCACCG TGTTCGACTA CCTCGGCAAG AACGCGACGG TGGTGCTGCA CGGCGATTTG GAACCCGCCT TCCAGCGCTT CTGGCAGGAC ACCAAGGACC GCTACCGGCT GGTGAAGGAC GCGCCCGACC GCCCCGCGCT GCCGCCCGAA TCGCTGTTTT TGACCACCGA GCAGTTCTAT ACGCGCGCCA ACGACTATGC CCAGCTGGCG CTGCGCGGCA CGGTCGAAGA CGTGGCCGAC AACGCACAAT TCCAGAAACT CGGCGAAATG GCCGTGGTGC GCGGCGCCGA AGACCCGCTG GCCGGCTTCA AGCGCCATGC CAAAAACACC GCCCACCGCG TGCTGCTGCT GGCCGAAAGC GATGGCCGGC GCGAAAGCCT GCTGGACTTT TTGCGCGCCA GCAACGTCAG CCCGCCCGCC TTCGACTCGC TCGAAGACTT CCAGACCAGC ATTGAGAAAA TCGGCATCGC CACCGCTGCG CTGCACACCG GCTTCAGCTG GCTTGAAGAA AGCATCGACT TCGTCACCGA AACCGAGCTG TTCGCAGCCG GCGTCACCAT CCGCCGGCGC AACAAGCGCC AAGAACAGGT CAGCGATGTC GAAGCGCTGA TCAAGGACTT GTCCGAACTC AACGTCGGCG ACCCAGTGGT GCACAGCGCC CACGGCATCG GCCGCTACCG GGGGCTGATC AACCTCGATC TGGGCGAAAA GAATCCCGAC GGCTCGCCCG CATTGCAGGA ATTTTTGCAC CTCGAATACG CCGACAAGGC CACGCTCTAC GTGCCGGTCA GCCAGTTGCA CCTGATCAGC CGCTACACCG GCGTCAGCGC CGATGAGGCA CCGCTGCACA AGCTGGGCAG CGGCCAGTGG GAAAAGGCCA GGCGCAAGGC CGCCGAGCAA ATCCGCGATT CGGCCGCCGA ACTGCTCAAC ATCTACGCCC GCCGCGCCGC CCGGGAAGGC CATGCCTTTC GCTACTCGCC CGGCGACTAC GAGGTGTTCG CCAACGATTT CGGCTTTGAC GAAACGCCCG ACCAGAGCGC GGCGATTCAC GCCGTCATCC AGGACATGAT CAGCCCGCGC CCGATGGACC GGCTGGTCTG CGGCGACGTG GGTTTCGGCA AGACCGAAGT CGCCCTGCGC GCGGCTTTCA TCGCGATTAC CGGCGGCAAG CAGGTGGCGC TCCTGGCGCC GACCACGCTG CTGGCCGAAC AGCACTACCA GACGCTGGTG GACCGCTTCG CCAAGTGGCC GGTCCGGGTC GCCGAGATGA GCCGCTTCCG TTCGGCCAAG GAAATCACCG CCGCCATCAA GGGCCTGGCC GATGGCAGCG TCGATATCGT CGTCGGCACG CACAAGCTGC TGAGCGAAAC AACCAAGTTC AAGGACTTGG GGCTGCTCAT CATTGACGAG GAACACCGCT TTGGCGTGCG CCACAAGGAG GCCATGAAAG CCCTGCGCGC CGAGGTCGAT GTGCTGACGC TGACGGCCAC GCCGATTCCG CGCACGCTGG GCATGGCGCT TGAAGGCTTG AGGGATTTAA GCGTGATCGC GACCGCCCCG CAAAGGCGTC TCGCCATCAA GACCTTTGTG CGCACCGAGG GCAACGGCGT GATCCGCGAG GCCGTGCTGC GCGAATTGAA GCGCGGCGGC CAGGTTTACT TTTTGCACAA CGAAGTCGAA ACCATTGAAA ACCGCCGCCA GAAGCTCGAA GAGCTGCTGC CCGAGGCGCG CATTGCCATC GCCCACGGCC AGATGCCCGA GCGCGAACTG GAGCGGGTCA TGAAGGACTT CGTCGCCCAG CGCTTCAATG TGCTGCTGTG CTCGACCATC ATCGAGACCG GCATCGACGT GCCCAGCGCC AACACCATTT TGATGAGCCG CGCCGACAAG TTCGGCCTGG CGCAACTGCA CCAGCTGCGC GGCCGCGTCG GCCGAAGCCA CCACCAGGCC TATGCCTACC TGATGGTGCC CGACCTCGAA GGCCTGACCA AGCAGGCCAG CCAGCGCCTG GACGCGATTC AGCAGATGGA AGAACTCGGC TCGGGCTTCT ATTTGGCGAT GCACGACCTG GAGATTCGCG GCACCGGCGA GGTGCTGGGC GAAAACCAGA GCGGCAACAT GCTCGAAATC GGCTTTCAGC TCTACAACGA AATGCTGGGC GAAGCGGTGG CGTCCTTGAA GGCCGGCCGC GAGCCGGATT TGCTGTCGCC GCTCAGCGTG ACCACCGAGA TCAACCTGCA CGCACCCGCC CTGCTGCCGA GCGACTACTG CGGCGACGTG CATCTGCGCC TGAGCTTCTA CAAAAAGCTG GCCACGGCGA AGAAGACCGA CCAGATCGAC GCCCTGCTCG AAGAACTCGT GGACCGCTTC GGCAAGCTGC CCGCGCAGGC GCAGACGCTG ATCGACGTGC ACCGCCTGCG CGTGATCGCC CGGCCGTATG GCGTGGTCAA GGTCGATGCC GCGCCCGGCG TCATCACCAT CACCTTCAAG AAAGACCCGC CGATTGACGC CATGGCCATC ATCCAGCTGA TCCAGAAGAA CAAGCACATC AAGCTCGCCG GCAACGACAA GCTGCGCATC GAGCGTGCCT TGCCCGAAGC GAAGGACCGG GCGCAGATGG TGCGCGACGT GCTGCGGAGC CTGGGGCAGC CGGTGGCGGC AGAGGTATTG GCATAG
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Protein sequence | MHLPLLATGK RYTLPQPTGS ADALLLARLG QREKAAGKLT AIVTSDASTA QRLMDEMAFF APDLRCALFP DWETLPYDAF SPHQDLISER LATLWRIQQR DKETGADVVI VPATTALYRL APPSFLAGYT FEFKVRQKLD ETRLKAQLTL AGYSHVTQVV SPGEYAVRGG LIDLFPMGSL VPYRVDLFDD EIDSIRTFDP DSQRSLYPVP EVRLLPGREF PMDDDARAKF RKRWRELLDG DPTKSRIYKD MGNGVATAGI EYYLPLFFEE TATVFDYLGK NATVVLHGDL EPAFQRFWQD TKDRYRLVKD APDRPALPPE SLFLTTEQFY TRANDYAQLA LRGTVEDVAD NAQFQKLGEM AVVRGAEDPL AGFKRHAKNT AHRVLLLAES DGRRESLLDF LRASNVSPPA FDSLEDFQTS IEKIGIATAA LHTGFSWLEE SIDFVTETEL FAAGVTIRRR NKRQEQVSDV EALIKDLSEL NVGDPVVHSA HGIGRYRGLI NLDLGEKNPD GSPALQEFLH LEYADKATLY VPVSQLHLIS RYTGVSADEA PLHKLGSGQW EKARRKAAEQ IRDSAAELLN IYARRAAREG HAFRYSPGDY EVFANDFGFD ETPDQSAAIH AVIQDMISPR PMDRLVCGDV GFGKTEVALR AAFIAITGGK QVALLAPTTL LAEQHYQTLV DRFAKWPVRV AEMSRFRSAK EITAAIKGLA DGSVDIVVGT HKLLSETTKF KDLGLLIIDE EHRFGVRHKE AMKALRAEVD VLTLTATPIP RTLGMALEGL RDLSVIATAP QRRLAIKTFV RTEGNGVIRE AVLRELKRGG QVYFLHNEVE TIENRRQKLE ELLPEARIAI AHGQMPEREL ERVMKDFVAQ RFNVLLCSTI IETGIDVPSA NTILMSRADK FGLAQLHQLR GRVGRSHHQA YAYLMVPDLE GLTKQASQRL DAIQQMEELG SGFYLAMHDL EIRGTGEVLG ENQSGNMLEI GFQLYNEMLG EAVASLKAGR EPDLLSPLSV TTEINLHAPA LLPSDYCGDV HLRLSFYKKL ATAKKTDQID ALLEELVDRF GKLPAQAQTL IDVHRLRVIA RPYGVVKVDA APGVITITFK KDPPIDAMAI IQLIQKNKHI KLAGNDKLRI ERALPEAKDR AQMVRDVLRS LGQPVAAEVL A
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