Gene Pnap_2550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2550 
Symbol 
ID4687000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2687152 
End bp2690637 
Gene Length3486 bp 
Protein Length1161 aa 
Translation table11 
GC content65% 
IMG OID639835558 
Producttranscription-repair coupling factor 
Protein accessionYP_982774 
Protein GI121605445 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.277957 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0823791 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCTTC CTCTACTCGC GACCGGCAAA CGCTACACCC TGCCCCAGCC CACGGGTTCC 
GCCGACGCCC TGCTGCTGGC CCGCTTGGGG CAGCGCGAAA AAGCCGCCGG CAAACTCACC
GCCATCGTCA CCTCGGACGC CAGCACGGCC CAGCGCCTGA TGGACGAGAT GGCGTTTTTT
GCGCCCGACC TGCGCTGCGC GCTGTTTCCC GACTGGGAAA CGCTGCCCTA CGACGCGTTT
TCGCCGCACC AGGATTTGAT CAGCGAACGG CTGGCCACGC TGTGGCGCAT CCAGCAGCGC
GACAAGGAAA CCGGCGCCGA CGTGGTCATC GTGCCGGCCA CCACCGCGCT GTACCGGCTG
GCGCCGCCGT CTTTCCTGGC CGGCTACACG TTTGAATTCA AGGTCAGGCA AAAGCTCGAT
GAAACCCGGC TGAAGGCCCA GCTCACGCTG GCGGGCTACA GCCATGTGAC GCAGGTCGTC
AGCCCCGGCG AATACGCGGT GCGCGGCGGC CTGATCGACC TGTTCCCGAT GGGCTCGCTG
GTGCCTTACC GCGTCGATCT GTTCGATGAC GAAATCGACA GCATCCGCAC TTTTGACCCG
GACAGCCAGC GCAGCCTCTA CCCGGTGCCC GAGGTGCGCT TGCTGCCGGG CCGCGAATTC
CCGATGGACG ACGATGCGCG CGCCAAATTC CGCAAGCGCT GGCGCGAACT GCTCGACGGC
GACCCGACCA AGAGCCGCAT CTACAAGGAC ATGGGCAACG GCGTGGCGAC GGCAGGCATC
GAGTACTACC TGCCGCTGTT CTTCGAAGAA ACCGCCACCG TGTTCGACTA CCTCGGCAAG
AACGCGACGG TGGTGCTGCA CGGCGATTTG GAACCCGCCT TCCAGCGCTT CTGGCAGGAC
ACCAAGGACC GCTACCGGCT GGTGAAGGAC GCGCCCGACC GCCCCGCGCT GCCGCCCGAA
TCGCTGTTTT TGACCACCGA GCAGTTCTAT ACGCGCGCCA ACGACTATGC CCAGCTGGCG
CTGCGCGGCA CGGTCGAAGA CGTGGCCGAC AACGCACAAT TCCAGAAACT CGGCGAAATG
GCCGTGGTGC GCGGCGCCGA AGACCCGCTG GCCGGCTTCA AGCGCCATGC CAAAAACACC
GCCCACCGCG TGCTGCTGCT GGCCGAAAGC GATGGCCGGC GCGAAAGCCT GCTGGACTTT
TTGCGCGCCA GCAACGTCAG CCCGCCCGCC TTCGACTCGC TCGAAGACTT CCAGACCAGC
ATTGAGAAAA TCGGCATCGC CACCGCTGCG CTGCACACCG GCTTCAGCTG GCTTGAAGAA
AGCATCGACT TCGTCACCGA AACCGAGCTG TTCGCAGCCG GCGTCACCAT CCGCCGGCGC
AACAAGCGCC AAGAACAGGT CAGCGATGTC GAAGCGCTGA TCAAGGACTT GTCCGAACTC
AACGTCGGCG ACCCAGTGGT GCACAGCGCC CACGGCATCG GCCGCTACCG GGGGCTGATC
AACCTCGATC TGGGCGAAAA GAATCCCGAC GGCTCGCCCG CATTGCAGGA ATTTTTGCAC
CTCGAATACG CCGACAAGGC CACGCTCTAC GTGCCGGTCA GCCAGTTGCA CCTGATCAGC
CGCTACACCG GCGTCAGCGC CGATGAGGCA CCGCTGCACA AGCTGGGCAG CGGCCAGTGG
GAAAAGGCCA GGCGCAAGGC CGCCGAGCAA ATCCGCGATT CGGCCGCCGA ACTGCTCAAC
ATCTACGCCC GCCGCGCCGC CCGGGAAGGC CATGCCTTTC GCTACTCGCC CGGCGACTAC
GAGGTGTTCG CCAACGATTT CGGCTTTGAC GAAACGCCCG ACCAGAGCGC GGCGATTCAC
GCCGTCATCC AGGACATGAT CAGCCCGCGC CCGATGGACC GGCTGGTCTG CGGCGACGTG
GGTTTCGGCA AGACCGAAGT CGCCCTGCGC GCGGCTTTCA TCGCGATTAC CGGCGGCAAG
CAGGTGGCGC TCCTGGCGCC GACCACGCTG CTGGCCGAAC AGCACTACCA GACGCTGGTG
GACCGCTTCG CCAAGTGGCC GGTCCGGGTC GCCGAGATGA GCCGCTTCCG TTCGGCCAAG
GAAATCACCG CCGCCATCAA GGGCCTGGCC GATGGCAGCG TCGATATCGT CGTCGGCACG
CACAAGCTGC TGAGCGAAAC AACCAAGTTC AAGGACTTGG GGCTGCTCAT CATTGACGAG
GAACACCGCT TTGGCGTGCG CCACAAGGAG GCCATGAAAG CCCTGCGCGC CGAGGTCGAT
GTGCTGACGC TGACGGCCAC GCCGATTCCG CGCACGCTGG GCATGGCGCT TGAAGGCTTG
AGGGATTTAA GCGTGATCGC GACCGCCCCG CAAAGGCGTC TCGCCATCAA GACCTTTGTG
CGCACCGAGG GCAACGGCGT GATCCGCGAG GCCGTGCTGC GCGAATTGAA GCGCGGCGGC
CAGGTTTACT TTTTGCACAA CGAAGTCGAA ACCATTGAAA ACCGCCGCCA GAAGCTCGAA
GAGCTGCTGC CCGAGGCGCG CATTGCCATC GCCCACGGCC AGATGCCCGA GCGCGAACTG
GAGCGGGTCA TGAAGGACTT CGTCGCCCAG CGCTTCAATG TGCTGCTGTG CTCGACCATC
ATCGAGACCG GCATCGACGT GCCCAGCGCC AACACCATTT TGATGAGCCG CGCCGACAAG
TTCGGCCTGG CGCAACTGCA CCAGCTGCGC GGCCGCGTCG GCCGAAGCCA CCACCAGGCC
TATGCCTACC TGATGGTGCC CGACCTCGAA GGCCTGACCA AGCAGGCCAG CCAGCGCCTG
GACGCGATTC AGCAGATGGA AGAACTCGGC TCGGGCTTCT ATTTGGCGAT GCACGACCTG
GAGATTCGCG GCACCGGCGA GGTGCTGGGC GAAAACCAGA GCGGCAACAT GCTCGAAATC
GGCTTTCAGC TCTACAACGA AATGCTGGGC GAAGCGGTGG CGTCCTTGAA GGCCGGCCGC
GAGCCGGATT TGCTGTCGCC GCTCAGCGTG ACCACCGAGA TCAACCTGCA CGCACCCGCC
CTGCTGCCGA GCGACTACTG CGGCGACGTG CATCTGCGCC TGAGCTTCTA CAAAAAGCTG
GCCACGGCGA AGAAGACCGA CCAGATCGAC GCCCTGCTCG AAGAACTCGT GGACCGCTTC
GGCAAGCTGC CCGCGCAGGC GCAGACGCTG ATCGACGTGC ACCGCCTGCG CGTGATCGCC
CGGCCGTATG GCGTGGTCAA GGTCGATGCC GCGCCCGGCG TCATCACCAT CACCTTCAAG
AAAGACCCGC CGATTGACGC CATGGCCATC ATCCAGCTGA TCCAGAAGAA CAAGCACATC
AAGCTCGCCG GCAACGACAA GCTGCGCATC GAGCGTGCCT TGCCCGAAGC GAAGGACCGG
GCGCAGATGG TGCGCGACGT GCTGCGGAGC CTGGGGCAGC CGGTGGCGGC AGAGGTATTG
GCATAG
 
Protein sequence
MHLPLLATGK RYTLPQPTGS ADALLLARLG QREKAAGKLT AIVTSDASTA QRLMDEMAFF 
APDLRCALFP DWETLPYDAF SPHQDLISER LATLWRIQQR DKETGADVVI VPATTALYRL
APPSFLAGYT FEFKVRQKLD ETRLKAQLTL AGYSHVTQVV SPGEYAVRGG LIDLFPMGSL
VPYRVDLFDD EIDSIRTFDP DSQRSLYPVP EVRLLPGREF PMDDDARAKF RKRWRELLDG
DPTKSRIYKD MGNGVATAGI EYYLPLFFEE TATVFDYLGK NATVVLHGDL EPAFQRFWQD
TKDRYRLVKD APDRPALPPE SLFLTTEQFY TRANDYAQLA LRGTVEDVAD NAQFQKLGEM
AVVRGAEDPL AGFKRHAKNT AHRVLLLAES DGRRESLLDF LRASNVSPPA FDSLEDFQTS
IEKIGIATAA LHTGFSWLEE SIDFVTETEL FAAGVTIRRR NKRQEQVSDV EALIKDLSEL
NVGDPVVHSA HGIGRYRGLI NLDLGEKNPD GSPALQEFLH LEYADKATLY VPVSQLHLIS
RYTGVSADEA PLHKLGSGQW EKARRKAAEQ IRDSAAELLN IYARRAAREG HAFRYSPGDY
EVFANDFGFD ETPDQSAAIH AVIQDMISPR PMDRLVCGDV GFGKTEVALR AAFIAITGGK
QVALLAPTTL LAEQHYQTLV DRFAKWPVRV AEMSRFRSAK EITAAIKGLA DGSVDIVVGT
HKLLSETTKF KDLGLLIIDE EHRFGVRHKE AMKALRAEVD VLTLTATPIP RTLGMALEGL
RDLSVIATAP QRRLAIKTFV RTEGNGVIRE AVLRELKRGG QVYFLHNEVE TIENRRQKLE
ELLPEARIAI AHGQMPEREL ERVMKDFVAQ RFNVLLCSTI IETGIDVPSA NTILMSRADK
FGLAQLHQLR GRVGRSHHQA YAYLMVPDLE GLTKQASQRL DAIQQMEELG SGFYLAMHDL
EIRGTGEVLG ENQSGNMLEI GFQLYNEMLG EAVASLKAGR EPDLLSPLSV TTEINLHAPA
LLPSDYCGDV HLRLSFYKKL ATAKKTDQID ALLEELVDRF GKLPAQAQTL IDVHRLRVIA
RPYGVVKVDA APGVITITFK KDPPIDAMAI IQLIQKNKHI KLAGNDKLRI ERALPEAKDR
AQMVRDVLRS LGQPVAAEVL A