| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2548 |
|---|
| Symbol | |
|---|
| ID | 4686223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2685857 |
|---|
| End bp | 2686357 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639835556 |
|---|
| Product | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| Protein accession | YP_982772 |
|---|
| Protein GI | 121605443 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.229032 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCCG CTCCCATCGC CCCGCTTCCC CCGTTCCGCA TCGGCGAGGG CTGGGACACG
CATGCGCTGG TGCCGGGGCG CAAGCTGATG TTGGGCGGCG TCGAGGTGGC GCACACGCTG
GGCCTGCTCG GGCATTCGGA TGCCGATGTG CTGCTGCACG CGATCATCGA CGCGCTGCTG
GGCGCGGCCG GGCTGGGCGA TATCGGGAGC CATTTTCCCG ATACCGATGC GCGTTTCAAG
GGCGCCGATT CGGTGCTGCT GCTGCGTGAA ACCGGCCGGC TGCTGGCCGC GCGCGGCCTG
CGCATCGGCA ACATCGACAG CACCATCGTG GCGCAGGCGC CCCGGCTGGC GCCGCACATC
CAGGCGATGC GGGTTCGCAT CGCCGAGGCG CTGGGACTGC AGGAAAGCCA GGTCAATGTC
AAGGCCAAGA CGGCCGAAAA GCTCGGTCCG GTCGGCCAGG GCCTGAGTCT GGAAGCGCGG
GCGGTTGCGC TATTGTATTG A
|
|---|
| Protein sequence | MNSAPIAPLP PFRIGEGWDT HALVPGRKLM LGGVEVAHTL GLLGHSDADV LLHAIIDALL
GAAGLGDIGS HFPDTDARFK GADSVLLLRE TGRLLAARGL RIGNIDSTIV AQAPRLAPHI
QAMRVRIAEA LGLQESQVNV KAKTAEKLGP VGQGLSLEAR AVALLY
|
|---|
| |