Gene Pnap_2539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2539 
Symbol 
ID4686072 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2677400 
End bp2678182 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content62% 
IMG OID639835547 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_982763 
Protein GI121605434 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.643723 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAAAG GTAAAACAGC TCTTGTCACA GGCTCGACCA GCGGAATCGG CCTGGGCATT 
GCCAAGGCCC TGGCCGAACA GGGCGCCAAC ATCGTCTTGA ACGGATTTGG CGATGTGGAC
GGCCCCAAGG CCGAGATTAC AGCGCTGGGC GTGAAAGTCG CTTACCACGG CGCCGACATG
AGCAAGCCAG GTGAGATCGA GGAGATGATG CGTTTTGCCG CCGCCGAGTT TGGCCAGGTC
GATATCCTGG TCAACAACGC CGGCATCCAG CACGTTGCCC GGATTGAAAA CTTTCCGGCT
GAAAAGTGGG ATGCGATCAT CGCCATCAAT CTGAGCAGCG CCTTTCACGC AACCCGCCTG
GCGCTGCCCG CCATGCAGGC CGCTGACAAC GGCAAGGGCT GGGGCCGCAT CATCAACCTG
GCGTCGGTGC ATGGCCTGGT GGGTTCGGCC GAAAAATCAG CCTATGTCGC GGCCAAGCAC
GGCATTGTCG GCCTGACCAA GGTGACGGCC CTTGAAAACG CCACCAGCGG CGTGACGTGC
AACGCCATCT GCCCGGGCTG GGTGCTGACG CCGCTGGTGC AAAAACAGGT CGATGCCCGG
GCTGCGGAAG GCGGCATCAG CAACGAAGCG GCCAAGCAGC AACTGCTGGG TGAAAAAGAA
CCGTCGATGC AGTTCACCAC GCCTGAAGAA CTGGGCGCGC TGGCGGTGTT TTTCTGCTCG
CCGGCCGGCG CCAATATCCG GGGCGTGGCG TGGAACATGG ATGGCGGCTG GACCGCGCAA
TAA
 
Protein sequence
MLKGKTALVT GSTSGIGLGI AKALAEQGAN IVLNGFGDVD GPKAEITALG VKVAYHGADM 
SKPGEIEEMM RFAAAEFGQV DILVNNAGIQ HVARIENFPA EKWDAIIAIN LSSAFHATRL
ALPAMQAADN GKGWGRIINL ASVHGLVGSA EKSAYVAAKH GIVGLTKVTA LENATSGVTC
NAICPGWVLT PLVQKQVDAR AAEGGISNEA AKQQLLGEKE PSMQFTTPEE LGALAVFFCS
PAGANIRGVA WNMDGGWTAQ