| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2521 |
|---|
| Symbol | |
|---|
| ID | 4689686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2655495 |
|---|
| End bp | 2657105 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639835528 |
|---|
| Product | transposase IS66 |
|---|
| Protein accession | YP_982745 |
|---|
| Protein GI | 121605416 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3436] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.538642 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.424177 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCTG CGCCTGCCAC CGAAGAATTC AACGCCTTGA AAGAGGCGCT GGCGCAGGCT
TTGCGGAACG GCGAAATCTT GGCGGGCGAG TTGCGCATGG TGCGTGCCGA GCGTGACCTG
CTTCGCGAGC GGCTTAACCA GTCCATGCGC AAGCTCTTTG CCGCCCGCAG CGAAGCGAGC
AGCACGCAGC AACGGGACCT GTTCTTCAAC GAGGCCGAAT CGCTGGGCGC GGCCAGCGAG
CCGGCGCAGG ACGGCGCCAG CGACGGCCAT GAAGACGACA GCCAGGAGGT CCGCGCCCAC
CAGCGCGTGC CGCGCGGACG CAAGCCGCTT GATGCGGCCT TGCCCCGGGA AGTGGTGCGC
CACGAATTGC CCGAGTCCGA GCGGGTGTGC CCACACGATG GCGCGGTGCT GGTGGAAATT
GGCGTGGAGG CCAGCGAGCA GCTCGACATC ATTCCCCAGC AGGTGCGCGT GATTCGCCAT
GAACGCGTCA AATATGCCTG TCCCTGCTGC GATGGCGCCT TGCGCCTGGC GCCCAAGCCG
GCGCAGGTCA TCCCCAAGGG CTTGTTCAGC GCAGGACTGC TGGCCTGGGT GATTGCGTCC
AAGTATTGCG ACGGCCTGCC GTTGTACCGC CAGGCGGCGC TGCTCTCGCG CTTTGGCGGC
AGCGACCTGT CGCGCAACAC GCTGGCCGCC AGCGTCGTGC GCGTGGGCCG GGAGGTGCAG
CCCATCATCA ATCTGCTGCG CGACCATCTG CTGGACTCGC CCCTCATCCA TGGCGACGAA
ACCCATGTGC AGGTACTCAA AGAGGCCGGC AAAAGTGCGC AGTCCAAAAG CTACATGTGG
GTGCAGATGA CCCCGTGCTC CGGGATGCAG GGAGCCGGGC CGCCCATCCG GCTGTTTGGC
TACGCGCCCT CGCGCAGCAC GGCGGCCGCA CAAATCCTGT ACGCCGGGGT GCGCGAGGGC
AGCGTGCTGA TGAGCGATGG CTACGCCGTC TATGACGCTA TCGCGCAGGC GCACGGCCTC
GTGCATCTGG GATGCTGGGC GCATTGCAGG CGCGGCTTTC ATGAAGCGCT GCAGGCGCTG
CCCAAGAGCG CGCGCGGCCC CGAGCAGCTC TCGGCGCGGT TTCTCGCGCT CATCGCCCAG
CTGTATGCGG TGGAGTCACG CGCACACGAA CACCGGCTCC TTCCCAAGGA ATTGCTGGCC
CAGCGCCAGC AGCACAGCGT GCCCGTGCTC GGTCAGATAG AGGCGCTGCT GCTGGCCAAC
GTGCACGCCG TGCTGCCGGG CAGCTTGCTG GGCAAGGCGC TGCATTACCT GGCTTCGCAA
TGGACGAAGC TGGCGCTGTA TGTCACCGAT GGCGCCTATC CGATAGACAA CAATGCCTGC
GAAAATTCGA TTCGCCCGTT TTGCATTGGA CGGCGCAACT GGCTCTTCAG TGATACGGTG
GCCGGCGCCC AGGCCAGCGC CAACTTGTAT TCGCTGCTGC AGACCTGCGC GGCCAACGGC
GTCGATGGCT ACGCGTACCT GCGCGCATTG CTCAGCGCGC TGCCCATGGC AAAAACGGCC
GATGACTACG AAGCGTTGCT GCCTTGGCGC ATCGAGCTGC CCAGCCGCTG A
|
|---|
| Protein sequence | MNAAPATEEF NALKEALAQA LRNGEILAGE LRMVRAERDL LRERLNQSMR KLFAARSEAS
STQQRDLFFN EAESLGAASE PAQDGASDGH EDDSQEVRAH QRVPRGRKPL DAALPREVVR
HELPESERVC PHDGAVLVEI GVEASEQLDI IPQQVRVIRH ERVKYACPCC DGALRLAPKP
AQVIPKGLFS AGLLAWVIAS KYCDGLPLYR QAALLSRFGG SDLSRNTLAA SVVRVGREVQ
PIINLLRDHL LDSPLIHGDE THVQVLKEAG KSAQSKSYMW VQMTPCSGMQ GAGPPIRLFG
YAPSRSTAAA QILYAGVREG SVLMSDGYAV YDAIAQAHGL VHLGCWAHCR RGFHEALQAL
PKSARGPEQL SARFLALIAQ LYAVESRAHE HRLLPKELLA QRQQHSVPVL GQIEALLLAN
VHAVLPGSLL GKALHYLASQ WTKLALYVTD GAYPIDNNAC ENSIRPFCIG RRNWLFSDTV
AGAQASANLY SLLQTCAANG VDGYAYLRAL LSALPMAKTA DDYEALLPWR IELPSR
|
|---|
| |