Gene Pnap_2509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2509 
Symbol 
ID4686081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2645366 
End bp2646019 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content57% 
IMG OID639835517 
Productconjugal transfer protein 
Protein accessionYP_982734 
Protein GI121605405 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3701] Type IV secretory pathway, TrbF components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.385646 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.64897 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAAAC AAAATCCATA CCTCAACGCC CGCCGGGAGT GGGATGAGCG CTACGGAGGG 
TTGATCTCAC GCGCGCGCAA TTGGCAACTG ATTGCGGCTG GCTCCTTGGC TGTCGCGGTT
GTGGCTGTGG TGGGCATTGC TTTCATCGGG TCCCAATCAA AGATTCAACC GTTTGTGGTT
GTCACCGATC AACTCGGCTC TCCGGTTGCT GTGGCCCGTC CTGCGCCGGT TGCAAAAAGT
GATTTCGACA AGCGGTTAAT GGTGGCCCAA CTGGCCGCCT TCATCAAAGA CGTCCGCTCC
ATGTTGCCCG ATGCTGTTGC CCAACAGGTC ACGCTCAACC GGGTGTATGC CATGGCGGGG
CGCGACGTGG CCGGATTCTT GAATGACTTC TTCAAGGACA ACTCGCCTTT CTCGGTCGAT
GGTTCGGTCA CCCGCGTGGA CATTTCGTCG GTCATTCCCC AAGGCGGTGA AGCCTACCAA
GTGTCCTGGG TGGAAACCAA AGCCAGGCCC GGCGCGACGT CTGTGGCAGA ACACTGGAAA
GCCGTCGTCA CGGTCGGGGT TGACGCCAAG CTGGCAGAAA ACCCCAAAGT CGCGCTCTGG
AATCCATTTG GCATTTACGT CAAGTCCATC TCCTGGACCA AAGAAGCTCT GTAA
 
Protein sequence
MSKQNPYLNA RREWDERYGG LISRARNWQL IAAGSLAVAV VAVVGIAFIG SQSKIQPFVV 
VTDQLGSPVA VARPAPVAKS DFDKRLMVAQ LAAFIKDVRS MLPDAVAQQV TLNRVYAMAG
RDVAGFLNDF FKDNSPFSVD GSVTRVDISS VIPQGGEAYQ VSWVETKARP GATSVAEHWK
AVVTVGVDAK LAENPKVALW NPFGIYVKSI SWTKEAL