Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2509 |
Symbol | |
ID | 4686081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 2645366 |
End bp | 2646019 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639835517 |
Product | conjugal transfer protein |
Protein accession | YP_982734 |
Protein GI | 121605405 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3701] Type IV secretory pathway, TrbF components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.385646 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.64897 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAAAC AAAATCCATA CCTCAACGCC CGCCGGGAGT GGGATGAGCG CTACGGAGGG TTGATCTCAC GCGCGCGCAA TTGGCAACTG ATTGCGGCTG GCTCCTTGGC TGTCGCGGTT GTGGCTGTGG TGGGCATTGC TTTCATCGGG TCCCAATCAA AGATTCAACC GTTTGTGGTT GTCACCGATC AACTCGGCTC TCCGGTTGCT GTGGCCCGTC CTGCGCCGGT TGCAAAAAGT GATTTCGACA AGCGGTTAAT GGTGGCCCAA CTGGCCGCCT TCATCAAAGA CGTCCGCTCC ATGTTGCCCG ATGCTGTTGC CCAACAGGTC ACGCTCAACC GGGTGTATGC CATGGCGGGG CGCGACGTGG CCGGATTCTT GAATGACTTC TTCAAGGACA ACTCGCCTTT CTCGGTCGAT GGTTCGGTCA CCCGCGTGGA CATTTCGTCG GTCATTCCCC AAGGCGGTGA AGCCTACCAA GTGTCCTGGG TGGAAACCAA AGCCAGGCCC GGCGCGACGT CTGTGGCAGA ACACTGGAAA GCCGTCGTCA CGGTCGGGGT TGACGCCAAG CTGGCAGAAA ACCCCAAAGT CGCGCTCTGG AATCCATTTG GCATTTACGT CAAGTCCATC TCCTGGACCA AAGAAGCTCT GTAA
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Protein sequence | MSKQNPYLNA RREWDERYGG LISRARNWQL IAAGSLAVAV VAVVGIAFIG SQSKIQPFVV VTDQLGSPVA VARPAPVAKS DFDKRLMVAQ LAAFIKDVRS MLPDAVAQQV TLNRVYAMAG RDVAGFLNDF FKDNSPFSVD GSVTRVDISS VIPQGGEAYQ VSWVETKARP GATSVAEHWK AVVTVGVDAK LAENPKVALW NPFGIYVKSI SWTKEAL
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