| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2503 |
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| Symbol | |
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| ID | 4689677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2636646 |
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| End bp | 2639090 |
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| Gene Length | 2445 bp |
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| Protein Length | 814 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639835511 |
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| Product | CagE, TrbE, VirB component of type IV transporter system |
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| Protein accession | YP_982728 |
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| Protein GI | 121605399 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCTTGA AAGAATTTCG CAGCCAGGCC CAAGGCCTGC CGGATCTGTT GCCCTGGGCG
GCGCTGATCG ACAACGGCGT GGTACTCACA AAATCTGGTG GCCTGCTGGC GGGTTTTGAA
TTTCGCGGCC CGGATCTGGA CAGTGCCACC AAAGAGGAAC TGGCGGCCGT GTCGGCTCGG
ATCAATGCGG CCCTGGCTCT TGATGACGGC TGGTGCTTGC ATGTGGATGC CGTGCGCCGT
CAATCCCCTG GTTACCCTTT GGACGGCGCT TTTCCGGACC GTACCACCCG ACTGCTGGAC
GATTGCCGCC GTCTCGCCCA TGAAGGCGAT TGGGCTGGCT TTCAAAGTGA CTACACGCTG
GTCTTGTGCT GGCATCCGGA CCGTGATGCT GCGGCAAAAG CCGAGATGCT GTTTGTGGAC
GGGGCTCAAA AGACTGGAGT GGCAGAGCGC AGTTTGACTC GCTTCAAAAC TGTTCTGGCT
GAAATTGAAT CGCGGCTGGC AGGAACGCTA AAGATCCGTC GCCTGGTGGA CACTGTCGAC
ACTGAAACCG GATCGGTTGA GAGTCAGCTT CTGGCGCATT TGGCTTCTTG TGTCGCTCTG
GCACCACGCG CCAGTTTTGT CATGGGCACG GTGCCAATGT ACCTTGACGC GGTACTAGGC
CAACACGACT TTGTGACGGG ATTCGAGCCC CGGATTGACG ACAAAACAGC TATTTGCATC
GCCGTGACGG GCTTTCCTGG CGCCAGTTTC CCCGGCATTC TGGACTTCTT GTCACGCTTG
CCGGTGGAAT ACCGCTGGTC AAATCGTTTC ATTTTCATGC CGGTGCGTGA AGCGGACAAG
GCCCTTGGCA ACTACCGTTC AAAGTGGGCG CAAAAGCGGC TGTCACTGAT GAACTTGATG
CGCTCAAGCC AGGGTGGCGG CGTCACCCAC GTGAATGCGG ATGCAGACGA TATGGCTGCG
GATGCGGTCG CCGCCATGGC TGAGGCCAGC AGCGGCCTGG TGCGATTTGG CTTTTACACC
AGCGTTATCC TGCTCTCCAG CGCAAACCTC CAACAATTGC GTGATGCCGC GCAATACGTA
ACCAAGATGA TCGCCAATGC CGGGTTTTCA GCTCGGGTCG AATCCGTCAA TGCGGTGGAA
GCTTATCTGG GAAGCATGCC TGGCAATCTG TATGCCAATG TGCGCCGCCC ACTGGTCAAC
ACCTTGAACC TGGCGCACTT ACTGCCCCTC ACGGCAATTT GGGCCGGTCC GGATGCTCAC
CCGTGTCCCT TTTATCCTGA GCATTCGGCG CCGCTGTTGC AGGCAAAAAC TGATGGTGCA
ACACCTTACC GGCTTTGTCT GCACGCGGGC GATCTGGGTC ACACGGCCAT CATCGGACCG
ACTGGATCGG GCAAGTCCAC TCTGTTGGCA ACACTGGTAG CGCAGCATTT CCGCTATCCG
GGCGCGCAAG CCTTTGTCTT TGACAAGGGC TATTCCATGT TCCCCTTGGT GGCTGCTGCC
GGTGGTCAGC ATTACGACAT TGCAGGTGAA TCGGACAACA TCACGTTTTG CCCCTTGGGA
CAAATTGACA ATGAACTGGA GCGCACCTGG GCGGCTGAAT GGCTTGAAAG CCTGGCAGAA
CTGCAAGGTG TGGCCATGTC ACCAGAACTG CGCAAAGAGC TCTTTCGCGC CGTCAACCAG
TTGGCGGCCT CCACAGACTG CGCGGAGCAA CGCACGCTGT CAAACTTTCT GTTGACCCTG
CAGGACAACC GTCTGCGTGA AGCGCTGGAA TACTACTCGC TGCGTGGATC AGCGGGGCGG
TTGCTGGATG CCGAAAGCGA TGGACTGCAG GCGGACATCT TCCAGGTCTT CGAGCTTGAA
CACCTGATGG CTCGCGGCGA AAAGATCGTG CTGCCCGTTC TGGCTTACCT GTTTCACCGG
CTTGAGCAGC GTTTTCACGG TCAACCTACC TTGTTGGTGC TTGATGAGGC CTGGATCATG
CTGGGGCACC CTGCATTCAG GGCCAAGATT CGCGAATGGC TGAAGGTGCT GCGCAAATCG
AACGTGGCCG TCATTTTTGC GACCCAGTCC CTGAGCGATC TGTCTGGCAG CGGGATTGCC
GATGTGATTT TCGAGTCTTG TCCCTCAAAA ATTCTGTTGC CCAACCCGCA AGCGCAAACC
GAAGCCTTGT GCGGGCTGTA TCAAGCGATT GGACTCAACC GTCGGCAAAT CCAGATCGTC
AGCAATGCCA TACCTAAGCG CCAGTATTAC CACCTGCACC CGGACGGCTC CCGCGTTTTT
GAATTGGGAC TGACTCCGCC GGAAATGGCC TTTGTTGGGG CAAGTGGACG CGAGGATTTG
GCGCGGATTC GTCATCTGCA AAAGCTCGAT GCGCTTACCT GGCCGTCTGC CTGGTTGCGG
GAACGCGGTC AGTTCGATGC CGCCCGTTTA TGGGATAGCT ATTGA
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| Protein sequence | MLLKEFRSQA QGLPDLLPWA ALIDNGVVLT KSGGLLAGFE FRGPDLDSAT KEELAAVSAR
INAALALDDG WCLHVDAVRR QSPGYPLDGA FPDRTTRLLD DCRRLAHEGD WAGFQSDYTL
VLCWHPDRDA AAKAEMLFVD GAQKTGVAER SLTRFKTVLA EIESRLAGTL KIRRLVDTVD
TETGSVESQL LAHLASCVAL APRASFVMGT VPMYLDAVLG QHDFVTGFEP RIDDKTAICI
AVTGFPGASF PGILDFLSRL PVEYRWSNRF IFMPVREADK ALGNYRSKWA QKRLSLMNLM
RSSQGGGVTH VNADADDMAA DAVAAMAEAS SGLVRFGFYT SVILLSSANL QQLRDAAQYV
TKMIANAGFS ARVESVNAVE AYLGSMPGNL YANVRRPLVN TLNLAHLLPL TAIWAGPDAH
PCPFYPEHSA PLLQAKTDGA TPYRLCLHAG DLGHTAIIGP TGSGKSTLLA TLVAQHFRYP
GAQAFVFDKG YSMFPLVAAA GGQHYDIAGE SDNITFCPLG QIDNELERTW AAEWLESLAE
LQGVAMSPEL RKELFRAVNQ LAASTDCAEQ RTLSNFLLTL QDNRLREALE YYSLRGSAGR
LLDAESDGLQ ADIFQVFELE HLMARGEKIV LPVLAYLFHR LEQRFHGQPT LLVLDEAWIM
LGHPAFRAKI REWLKVLRKS NVAVIFATQS LSDLSGSGIA DVIFESCPSK ILLPNPQAQT
EALCGLYQAI GLNRRQIQIV SNAIPKRQYY HLHPDGSRVF ELGLTPPEMA FVGASGREDL
ARIRHLQKLD ALTWPSAWLR ERGQFDAARL WDSY
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