| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2356 |
|---|
| Symbol | |
|---|
| ID | 4687332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2483828 |
|---|
| End bp | 2484415 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639835366 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_982584 |
|---|
| Protein GI | 121605255 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02943] RNA polymerase sigma-70 factor, TIGR02943 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.983663 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA CCAACCCCGG CGCTTTCGAG CAGCAAATTG CCTCGCACCG CGATTACCTG
CTGCGCTTTG CGCGGCTGCA GTTGCGCAAC GACACCTGGG CCGAGGACGC CGTGTCCGAA
ACCGTGCTGG CCGCGCTGGC CAGGCCGCAG GCCTTCGAGC GCCGCTCGCA GCTCAAGACC
TGGCTGGTCG GCATCCTCAA GCACAAGGTG ATCGACGCGC TGCGCCTGCA GGGCCGCGAG
GTCAGCCTGA GTCCGCAGGG TGACGATGCC GGCGCCGACG ACCTGCTGGA CCAGGCGCTG
TTTGCGCCCG ACGGCCACTT TGCCGAGCTG CCCGCCGACT GGGGCAACCC CGAGCAGGAA
CTGGGCAGCC GCCAGTTTTT TGCCGTGCTT GAAGCCTGCG CCGGCAAGCT GCCCGCCGCG
CAGGGGCGGC TGTTCCTGAT GCGCGAGTGG TTAGAGCTCT CCAGCGAAGA GATTTGTAAG
GAACTGGGCT TGACGCCGAC CAATCTCTAC GTGCAACTGC ACCGCGCGCG CCAGCGGCTG
CGCGAGTGCC TTGAATTGAA CTGGTTTGCG AACCCCCAAG CCCTATGA
|
|---|
| Protein sequence | MDFTNPGAFE QQIASHRDYL LRFARLQLRN DTWAEDAVSE TVLAALARPQ AFERRSQLKT
WLVGILKHKV IDALRLQGRE VSLSPQGDDA GADDLLDQAL FAPDGHFAEL PADWGNPEQE
LGSRQFFAVL EACAGKLPAA QGRLFLMREW LELSSEEICK ELGLTPTNLY VQLHRARQRL
RECLELNWFA NPQAL
|
|---|
| |