| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2176 |
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| Symbol | |
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| ID | 4686918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 2313015 |
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| End bp | 2316935 |
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| Gene Length | 3921 bp |
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| Protein Length | 1306 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639835186 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_982405 |
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| Protein GI | 121605076 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.440944 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.199905 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTTCCTT CCTTGTCCCC TCTGGCCATC ACTTTTCCCG AATCGCTGCC GGTTTCCGCC
AAGCGCGACG ACATCGCCGC GGCGCTCACG GCGCACCAGG TCATCATCGT CTGCGGTGAA
ACCGGCTCGG GCAAAACCAC GCAACTGCCG AAAATCGCCC TGGCACTGGG GCGCGGCAAG
CTCAACTACC CGCCCGGACA GGGCAGGATG ATCGGCCACA CCCAGCCGCG CCGCATCGCT
GCGTCCAGCG TCGCCAAGCG CATTGCCGAA GAGCTGAAAA CGCCGCTCGG CGACGTCGTT
GGCTACAAGG TGCGTTTCCA GGACCGGCTG AGCCGCGATG CGTCGGTCAA GCTGATGACC
GACGGCATCT TGCTGGCCGA AACGCAGACC GACCCGCTGC TGCGCGCCTA CGACACCATC
ATCATCGACG AGGCGCACGA GCGCAGCCTG AACATCGACT TTTTGCTCGG CTACCTGCGC
CAGCTGCTGC CGCGCCGGCC CGACCTGAAG GTCATCATTA CCTCGGCAAC CATCGACGCC
CAGCGGTTCG CGGATTACTT CGCGTCAGCC AAGGGGCCGG CGCCGGTCAT CATGGTCTCG
GGTCGCATGT TCCCGGTCGA GCAGCGCTAC CGCCCGTTCG AGGAGTCGCG CGACTACGGC
CTGAACGACG CGATTGCCGA TGCGGTCGAT GAACTTTGGT TGAGCCCGCA CAGCGCGGGC
GACATCCTGA TTTTCCTGCC CGGCGAGCGC GAGATCCGCG AAGCCGCCGA CCACCTGCGC
AAGCACCTGG CGCACCAGCC GCTGACGCGC AATGCCGAGG TGCTGCCGCT GTTCGCCCGC
CTGAGCCAGG CCGAGCAGGA CCGGATTTTT GACGGCCACA GCGGCCGGCG CATCGTGCTG
GCGACCAACG TGGCCGAAAC CTCATTGACC GTTCCGGGCA TCAGATACGT CATTGACGCA
GGCACGGCGC GCGTCAAGCG CTACAGTTTC AGGAACAAGG TCGAGCAGCT GATGGTCGAG
CCGATCTCGC AGTCGGCCGC CAACCAGCGC GCGGGCCGCT GCGGCCGGGT GGCCGACGGC
ATCTGCATCC GGCTGTACGA CGAGCCCGAC TTTCTGGGCC GGCCGCGCTT CACCGACCCC
GAGATTTTGC GCAGTTCGCT GGCCTCGGTG ATCCTGCGCA TGAAGTCGCT GCACCTCGGA
ACGATTGAAA ACTTTGCCTT CATCGAGCCG CCGCAGGGCC GCGCGATTGC CGACGGCTAC
CAGCTGCTGG CCGAACTCGG CGCGGTCAAT GACGACAACG AACTCACGCC CGTCGGCTGG
ACGCTGGCCA AGCTGCCGCT GGACCCGCGC GTCGGCCGCA TGATCCTGGA GGCCAAGGAC
CGGCAGGCGC TTGACGAGGT GCTGGTGATT GCCAGCGCGC TGAGCGTGCA GGACGTGCGC
GACCGGCCGA TGGACAAGCA GGCGCAGGCC GACCAGGCGC ATGCCAAGTT CGACGACGAG
AAGAGCGAAT TCGTCGGCTT CCTGAAGCTG TGGAAATGGC TGGGCGATTC GCGCGGCGGG
CATGACGCGA CGCACAAACT TACGAACCGC CAGTATGAAA CCCTGCTGCG CGAGAACTTC
GTCAACATCC GTCGCGTGCG CGAATGGCGC GACATCCATT CGCAATTGCA GGCGGTGGTC
GGCGAGCAGG GCTGGCACCT CAATGACAAG CCGGCCAGCT ACGAGCAGCT GCATTTGTCG
CTGCTGTGCG GCCTGCTGGG CAACATCGGC CTGAAAAGCG AAGAGGACGA CTGGTACCTG
GGCGCGCGCG GCATCCGGTT TTACCGCCAC CCCGGCGCGC GGCTCAGCAA GAAGCCGGGC
CGCTGGATCG TAGCAAGCGA GCTGGTCGAA ACCACGCGCC TGTTTGGCCG GGGCATCGCC
AACATCGACC CGCAGTGGAT CGAGCAGGTC GGCGGCCATC TTTTGAAGAA GCAGCTGCTC
GACCCGCACT GGGAGAAAAA AGCCGCGCAG GTGACCGCGC TGGAGCGCGC CACGCTGTAC
GGCCTGGTGG TTTACAACGG CCGGCGCGTC AACTTTGGCC GGGTCGATCC GGTGACCTCG
CGCGAAATCT TCATCCGCGA GGCGCTGGTG GCCGGCAACT GGGACACGAA ACTGCCCTTC
CTGGCCGCCA ACGAAAAGAT GATTGCCCAT GTCCAGGACC TGGAGCACAA GGCGCGCCGG
CAGGACGTGC TGGTCGATGA GGAGCTGATC TACGCTTTCT ACGACCAGCA ACTGCCGGCC
GACATCTGCA CCGGCGCGGG CTGCGAAAGC TGGTACAAAA CCGAAGCCAG AAAGCAGCCG
AATCTGCTGC TTTTGACGCA AGACGAGCTG ATGCGCCACG AAGCGGCCGG CATCACGACC
CAGGCTTTTC CGAAAACGCT GCGGCTGGGC GGCGTCGATT GCCTGGCGAC CTACCTGCAC
GAGCCCGGCG ACGCGCGCGA CGGCGTGACC GTCGATGTGC CGCTGTTCGC GCTGAACCAG
GTCAACGAGG AGCGCTGCGA ATGGCTGGTG CCCGGCATGC TGAAGGACAA GATCCAGGCG
CTGATCAAGA CCCTGCACCA GCGCCCGCGC TCGCGCCTGG TGCCGCTGCC CGACACGGCC
GCGCGCATGG CCGGGGAGCT GATGCAGGCC GAGAAGTTCG GCACCGGCTC GCTGACCGAC
GCGGTCTTGA AGTGGGTGCG CGATGCCACG TCGCTCGACA TCAAGCGCGG CGACTTGAAG
CTGGACATGC TGCCGCCACA CCTGTTCATG AACTTTCGCG TGGTCGATGA GCACGGGCGC
CAGCTGGGCG CGGGCCGCAA CCTGGGCGCG CTCAAGGGCG AGCTGGGCTC GCAAGCGCGC
GGGGCTTTTC AGGCGCTGGC GGGGCTGAAG AACCTGGGCA AGGCGGCGCC TGCACCCGCC
AATCCGGGAA AAACCGATGC TTCAGCGCAG AATTCAGCAT CAAATAAGCC TTCTGCGCAA
GCAGGACGGG CGCAAACAGC TCCTGAAAAG ATAGCAATTA AAACACCGGA GCGCTACACC
AGCTGGAGCT TTGGCGAATT GCCCGAGCTG ATGGAAATCG GCAAGGGCGC GCAGACCTTG
ATTGGTTTTC CGGCGCTGAT CGACCTGGGC GATGCGGTGA CCATCGAGGT GTTCGACGAG
CCCGATGCAG CCGCCATCAA GCACCGCGCC GGCTTGCGCC GCCTGTTTTC GCTGCAGATC
AAGGACGCGC TGAAATACCT GGAAAAAAAC CTGCCCGACC TGCAGAAAAC GGCGACTTCC
TACATGCTGG TGGGCCGCGC GGCCGACAAC TCGGGCGGCG GCACGGTGGA CGAGCTGCGC
CAGCAGATCA TCGAGGTGGC GCTGGACCGG GCGTTCTTGC TCGATCCGCT GCCGACCTGC
GAGGCCGACT TCAAGAAACG GGTGGACGAC GGACGCGGCC GCCTGACGCT GATTGCCAGC
GAGGTGGCGC GCCTGGCCGG CGCCATCCTG ATCGAGTTCG CCGTGGCGCA GCGAAAGATC
AAGGACACGA AAAACGCGAC GGAAGCGGTG CAGGATGCCG CTCAGCAGTT GCAGCGACTG
GTGCCCAAGA AGTTCCTGAC CACCACGCCT TACGGGCAGT TGCAGCATTT CACCCGCTAC
CTCAAGGCGA TCACCCTGCG GCTCGAAAAG TGGCGTGCCG ACCCGGCCAG GGACGCAGCC
CGCATGGTTG AACTGCGGCC GCAGGAGCAG CGCTACTGGC GCTTGGTGGC CGAGCGCAAG
GGCGTACTGG ATGCGCGCAT GCAGGAATAC CGCTGGCTGC TCGAAGAGCT GCGGGTGAGC
TTCTTCGCGC AGGAACTGCG AACGCCGCAG CCGGTCAGCA TCAAGCGGCT GGACAAGCTC
TGGGCGCAGC TCAACAGCTG A
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| Protein sequence | MLPSLSPLAI TFPESLPVSA KRDDIAAALT AHQVIIVCGE TGSGKTTQLP KIALALGRGK
LNYPPGQGRM IGHTQPRRIA ASSVAKRIAE ELKTPLGDVV GYKVRFQDRL SRDASVKLMT
DGILLAETQT DPLLRAYDTI IIDEAHERSL NIDFLLGYLR QLLPRRPDLK VIITSATIDA
QRFADYFASA KGPAPVIMVS GRMFPVEQRY RPFEESRDYG LNDAIADAVD ELWLSPHSAG
DILIFLPGER EIREAADHLR KHLAHQPLTR NAEVLPLFAR LSQAEQDRIF DGHSGRRIVL
ATNVAETSLT VPGIRYVIDA GTARVKRYSF RNKVEQLMVE PISQSAANQR AGRCGRVADG
ICIRLYDEPD FLGRPRFTDP EILRSSLASV ILRMKSLHLG TIENFAFIEP PQGRAIADGY
QLLAELGAVN DDNELTPVGW TLAKLPLDPR VGRMILEAKD RQALDEVLVI ASALSVQDVR
DRPMDKQAQA DQAHAKFDDE KSEFVGFLKL WKWLGDSRGG HDATHKLTNR QYETLLRENF
VNIRRVREWR DIHSQLQAVV GEQGWHLNDK PASYEQLHLS LLCGLLGNIG LKSEEDDWYL
GARGIRFYRH PGARLSKKPG RWIVASELVE TTRLFGRGIA NIDPQWIEQV GGHLLKKQLL
DPHWEKKAAQ VTALERATLY GLVVYNGRRV NFGRVDPVTS REIFIREALV AGNWDTKLPF
LAANEKMIAH VQDLEHKARR QDVLVDEELI YAFYDQQLPA DICTGAGCES WYKTEARKQP
NLLLLTQDEL MRHEAAGITT QAFPKTLRLG GVDCLATYLH EPGDARDGVT VDVPLFALNQ
VNEERCEWLV PGMLKDKIQA LIKTLHQRPR SRLVPLPDTA ARMAGELMQA EKFGTGSLTD
AVLKWVRDAT SLDIKRGDLK LDMLPPHLFM NFRVVDEHGR QLGAGRNLGA LKGELGSQAR
GAFQALAGLK NLGKAAPAPA NPGKTDASAQ NSASNKPSAQ AGRAQTAPEK IAIKTPERYT
SWSFGELPEL MEIGKGAQTL IGFPALIDLG DAVTIEVFDE PDAAAIKHRA GLRRLFSLQI
KDALKYLEKN LPDLQKTATS YMLVGRAADN SGGGTVDELR QQIIEVALDR AFLLDPLPTC
EADFKKRVDD GRGRLTLIAS EVARLAGAIL IEFAVAQRKI KDTKNATEAV QDAAQQLQRL
VPKKFLTTTP YGQLQHFTRY LKAITLRLEK WRADPARDAA RMVELRPQEQ RYWRLVAERK
GVLDARMQEY RWLLEELRVS FFAQELRTPQ PVSIKRLDKL WAQLNS
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