| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2135 |
|---|
| Symbol | |
|---|
| ID | 4688051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2274412 |
|---|
| End bp | 2276472 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639835146 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_982365 |
|---|
| Protein GI | 121605036 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.948561 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0173218 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAG AAACCATGTC CACAGTACGC ACCGAACAGA TCGGTGATGT CTTGCTGATT
GAAATCAACA ACCCGCCCAT CAACGCCGGA TCACTGACGG TGCGCCAGGG TCTGACGGCG
GCGATACAGC AGCTGCAGGC CCAGGCTGAC CTGGTGGCTG GCGTCATCAT CGGCGGCGGC
ACCACCTTCG TGGCCGGCTC CGATTTGCGC GAATTCGGCC AGCCGCTGCA AGACCCGCAG
ATGCCTGCCG TCATCGCTCT GATTGAAGCC TGCAGCAAAC CGGTTGTTGC CGCGCTGCAC
GGCGCGGCGC TGGGCGGCGG CCTGGAGCTG GCGCTGGCCT GCGATGCCCG CATCGCGCTG
GCCGGCACGC TGCTGGGCCT GCCCGAAGTC ACCCTGGGCA TCATTCCCGG CGCGGGCGGC
ACCCAGCGCC TGCCGCGCCG GGTCGGCGTG GCCCGCGCCA TCGAGATGAT CTGCAGCGGA
GAGCGCATCA CGGCCGACAA GGCGCTGGCG TTGCGGCTGA TCGATGAAGT CGTTGCCGGC
GACTTGCAGG CCCATGCGAT GGCGCTGGCG CGGCGGCTGG CGGGTCGCAA GTGCCGTATT
CGCGATGAAC AGGTTCCCAC GGAAGACGCG GCGGCCATCG AGCAGGCCGA GCAAACCGCG
CTGCGCGCCG GCAAGCGCCG GCCGGCCGTG CTGGCGGCCA TCGCGGCCGT CAAGAATGCC
GCCCGATTGC CCATCGACGA AGGCCTGGCG CAGGAGCGCG CGGTGTTCCA GCAACTGCGC
GTGTCCACCG AGGCGTATGC GCTGCGCCAC CAGTTCTTTG CCGAGCGCGA GGCGGCCAAG
CTGCCGGCCG CGCTGCAGGC AGCCCCCCGC CCGGTGCAGA CCGTGGCCGT GATTGGCGCC
GGCACCATGG GCGCGGGCAT TGCCATTTGC GCGCTCGATG CCGGGCTGAA CGTGATCCTG
CTGGAGCAGG ACGATGTGGC CCTGCAGCGC GGCCAGCAGC GCGTGGCCGA GCATTACCAA
AGCCGCGTGG CCGCTGGCAA GGTCAAGGCC GCCGTGGCCG CCGCCAGCCA GGCGCGCCTG
AGCCCCACGA CCGACTGGGT CCAGCTGGGC CGTGCCGACC TGGTCATCGA GGCAGTGTTC
GAGGACATGC CCGTCAAGCA GGACGTATTC AGGAAAATCG ATGCCCATGC GCGGTCAGGC
GCGGTGCTGG CCACCAACAC CTCCTACCTG GACGTGGATG CGATTGCCCA GCTGACGGCC
CGGCCGCAGG ACGTGCTGGG CCTGCACTTC TTCAGTCCGG CCAACGTCAT GAAGCTGCTC
GAAGTGGTGC GTGGCGAGCG GACGGCGGCC GATGTGGTCG CCACCGGCAT GGCCCTGGGC
AAGAAGCTCA AAAAGCTGCC GGTGCTGTGC GGCAATGCCT TTGGCTTCAT AGGCAACTGC
ATCTACAACG CCTACCGCAA GCAATGCGAA TTCATGCTGG AAGACGGCGC CTGGCCGGAG
GCCGTGGACC AGGCGCTGAC CGACTTGGGC TTTGCCATGG GCCCGTTCGC CGTGGCCGAC
CTGTCCGGCC TGGACATCGC CTGGCGCATG CGCAAGGCGC AGGCCGCCTC GCGCGATCCG
CGCGAGCGCT ATGTGGGCAT CCTCGACCAG CTGTGCGAGC AGGGGCGGCT GGGCCGCAAG
ACCGGAGCCG GCTACTACCG TTATCCCGAC GGCAAGCAGG TCAAAGCCAC CGATGCCATC
GTGCGCGCCA TCATCGAGCA GGCGTCAAGC CAGCGCGGCA TCACGCGCCG CACGCTTGAC
GCCACTGAAA TCCAGCGCCG CGCCCTGCTG GCCATGGTGA ACGAGGCGGC GCTGCTGCTG
GCCGAAGGCG TAGCTAGCCG TCCCAGCGAC ATCGACGTGG TGCTGGTGCA GGGCTACGGC
TTCCCGCGCT GGGAAGGCGG CCCGGTGTTC TGGGCGCGCC AGCAGGACCC GGCGCAACTG
GCGCAAGACC TGCAGCGCCT TGCCGGTGAA TCGGGCCACG GCTTTGTGGT GGCCGACCTG
TCTGTTTTGT TGAATCCCTA A
|
|---|
| Protein sequence | MKEETMSTVR TEQIGDVLLI EINNPPINAG SLTVRQGLTA AIQQLQAQAD LVAGVIIGGG
TTFVAGSDLR EFGQPLQDPQ MPAVIALIEA CSKPVVAALH GAALGGGLEL ALACDARIAL
AGTLLGLPEV TLGIIPGAGG TQRLPRRVGV ARAIEMICSG ERITADKALA LRLIDEVVAG
DLQAHAMALA RRLAGRKCRI RDEQVPTEDA AAIEQAEQTA LRAGKRRPAV LAAIAAVKNA
ARLPIDEGLA QERAVFQQLR VSTEAYALRH QFFAEREAAK LPAALQAAPR PVQTVAVIGA
GTMGAGIAIC ALDAGLNVIL LEQDDVALQR GQQRVAEHYQ SRVAAGKVKA AVAAASQARL
SPTTDWVQLG RADLVIEAVF EDMPVKQDVF RKIDAHARSG AVLATNTSYL DVDAIAQLTA
RPQDVLGLHF FSPANVMKLL EVVRGERTAA DVVATGMALG KKLKKLPVLC GNAFGFIGNC
IYNAYRKQCE FMLEDGAWPE AVDQALTDLG FAMGPFAVAD LSGLDIAWRM RKAQAASRDP
RERYVGILDQ LCEQGRLGRK TGAGYYRYPD GKQVKATDAI VRAIIEQASS QRGITRRTLD
ATEIQRRALL AMVNEAALLL AEGVASRPSD IDVVLVQGYG FPRWEGGPVF WARQQDPAQL
AQDLQRLAGE SGHGFVVADL SVLLNP
|
|---|
| |