| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2109 |
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| Symbol | benD |
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| ID | 4689019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 2248850 |
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| End bp | 2249629 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639835120 |
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| Product | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase |
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| Protein accession | YP_982339 |
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| Protein GI | 121605010 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.034592 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.346681 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCAC GTTTTCACAA CAAGGTCGCG GTGGTCACCG GCGCGGCCCA GGGCATTGGC
CGCAGCGTGG CCTTGCGCAT GGCGGCCGAG GGCGCCCGAC TGGTGCTGGT CGATCGCTCT
GAGCTGGTCT ATGAGCTGCG CGATGAACTG CTAGCTACGT CCGCCGAAGT GCTCGCGCTG
ACGGCGGACA TGGAAAAAAG CGTCGATTGC CAGCAGGTCA TGCAATCGGC CGCCCTGCGC
TTTGGCCGGC TCGACATCCT CATCAACAAC GTCGGCGGCA CCATCTGGGC CAAGCCTTTC
GAGCATTACC AGGTGGACGA GATCGAGGCC GAAGTGCGCC GCTCGCTGTT CCCGACCCTG
TGGTGCTGCC ATGCGGCGCT GCCGCACATG CTGGCGCAGG CCAGCGGCGC GATTGTCAAC
GTGTCGTCGA TTGCCACGCG CGGCGTCAAC CGCGTGCCTT ACGGTGCGGC CAAGGGCGGC
GTCAATGCCC TGACGGCCTG CCTGGCGATG GAGACAGCCG AGCGTGGCGT GCGTGTCAAT
GCGGTCGCCA CGGGCGGCAC CGAGGCGCCG CCGCGCCGCA TTCCGCGCAA CACCGCCGAG
CAGACCGAGC AGGAAAAAGT CTGGTACCAG CAAATCGTCG ATCAGACCAT TGCTTCGAGC
CTGATGAAGC GCTACGGCAC GATTGACGAG CAGGTCAGCG CCATCTTGTT CCTTGCCTCC
GACGAGGCGT CCTACATCAC CGGCGTCACG ATGCCGGTGG GCGGCGGCGA CCTCGGCTGA
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| Protein sequence | MNPRFHNKVA VVTGAAQGIG RSVALRMAAE GARLVLVDRS ELVYELRDEL LATSAEVLAL
TADMEKSVDC QQVMQSAALR FGRLDILINN VGGTIWAKPF EHYQVDEIEA EVRRSLFPTL
WCCHAALPHM LAQASGAIVN VSSIATRGVN RVPYGAAKGG VNALTACLAM ETAERGVRVN
AVATGGTEAP PRRIPRNTAE QTEQEKVWYQ QIVDQTIASS LMKRYGTIDE QVSAILFLAS
DEASYITGVT MPVGGGDLG
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