Gene Pnap_2108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2108 
Symbol 
ID4689067 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2247411 
End bp2248775 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content63% 
IMG OID639835119 
Productmajor facilitator superfamily transporter 
Protein accessionYP_982338 
Protein GI121605009 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00895] benzoate transport 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0152433 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.3868 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACAAA TTGACGTTCA CAAGCTGTCC GACGAGGCCA GATTCAATGG CTTTCACGGC 
AAGGTGCTGT TGTGGTGCGC CCTGATCATC ATCTTTGACG GCTACGACCT GGCGGTGGCC
GGCATCGCGC TGCCCTCGAT CATGAAGGAG ATGGGCGTCA CCGCCCAGAA CGCCGGCTTC
ATGGTCAGCT CGGCCCTGTT CGGCATGATG TTCGGCGCCA TCTTTCTGGG CACCATCGCC
GACAGGATCG GCCGGCGCAA GGCCATCGCG ATCTGCATCT TCCTCTTCAG CGTGTTCACC
GCCGCAGCGG GCTTTACCGA CAACCCCTAC ACCTTCAGCG CGATGCGCTT CCTGGCGGGC
CTGGGCATAG GCGGCGTCAT GCCCAACGTC GTGGCGCAGA TGACCGAGTA TTCACCGAAG
AAGATTCGCG CCACCATGGT CACGCTGATG TTCAGCGGCT ATGCCGTGGG CGGCATGCTG
GCCGCCTTGC TGGGCAAGGG GCTGATCGAA GCCTACGGCT GGTCGTCCGT CTTCCTGGCC
GCCGGTTTGC CGGTGATTTT GATCCCGTTC GTGCTGAAGT CGATGCCCGA GTCGATGCCC
TTCCTGATCA AGGAAAACCG GCTCGACGAA CTGAAGAACA TCGTCTCGCA GATGTCTCCT
GGCTACCGGC CCCAATCCGA TGACCGCTTC GCGCTGCCCT CGGCAGACAA GGCCGAAGGC
GCTCCGATTG GCAAGCTGTT CCAGGATGGC CGGGGTTTCA GCACCGTGAT GTTCTGGGTC
ACCTTCTTCA TGTGCCTGTT CATGGTCTAT GCCCTCAGCT CGTGGCTGAC CAAGCTGATG
GCGAGCGCCG GCTACAGCCT GGGCTCTGCG CTGACCTTTG TGCTGGTGCT CAACTTCGGC
GCCATGATCG GCGCGGTCGG CGGCGGCTGG CTGGCTGACC GCTTCCACAT CAAGTATGTG
CTGGTGGGCA TGTACGCGCT GGCGGCGGTG TCGATCACGC TGCTGGGCTA CAAGGTGCCG
ACCGAAGTGC TGTTCCTGCT GGTCGGGCTG GCCGGCGCAT CGACGATTGG CACGCAGATC
GTCACCTATG CCTATGCCGG CCAGTTCTAC CCGATGGCGA TCCGTTCGAC CGGCATCGGC
TGGGCGTCGG GCGTGGGCCG CAGTGGCGCC ATCCTGGCGC CGATCGTGAT CGGCACGCTG
GTGGGCATGT CGCTGCCGCT GGAGCAAAAC TTCATGGCCA TTGCCATTCC CGCCGTGATC
GCGATGATTG CCGCGTCGAT GATCAACCAC CGCCGCTCCG CCTCGGCCAG CCATGACAGC
GTGAGCGTGC TGACGCCTGC GGCTTCAGCG ATGGCGGGCA AGTAG
 
Protein sequence
MRQIDVHKLS DEARFNGFHG KVLLWCALII IFDGYDLAVA GIALPSIMKE MGVTAQNAGF 
MVSSALFGMM FGAIFLGTIA DRIGRRKAIA ICIFLFSVFT AAAGFTDNPY TFSAMRFLAG
LGIGGVMPNV VAQMTEYSPK KIRATMVTLM FSGYAVGGML AALLGKGLIE AYGWSSVFLA
AGLPVILIPF VLKSMPESMP FLIKENRLDE LKNIVSQMSP GYRPQSDDRF ALPSADKAEG
APIGKLFQDG RGFSTVMFWV TFFMCLFMVY ALSSWLTKLM ASAGYSLGSA LTFVLVLNFG
AMIGAVGGGW LADRFHIKYV LVGMYALAAV SITLLGYKVP TEVLFLLVGL AGASTIGTQI
VTYAYAGQFY PMAIRSTGIG WASGVGRSGA ILAPIVIGTL VGMSLPLEQN FMAIAIPAVI
AMIAASMINH RRSASASHDS VSVLTPAASA MAGK