| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2107 |
|---|
| Symbol | |
|---|
| ID | 4688716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2246034 |
|---|
| End bp | 2247215 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639835118 |
|---|
| Product | benzoate transporter |
|---|
| Protein accession | YP_982337 |
|---|
| Protein GI | 121605008 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3135] Uncharacterized protein involved in benzoate metabolism |
|---|
| TIGRFAM ID | [TIGR00843] benzoate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.07884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.334527 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG ACTTTTCCCT GTCAGCCGTC ACGGCTGGAT TCCTGGCCGT GCTGATTTCC
TATGCCGGTC CGCTGGTGAT ATTTTTCCAG GCCGGCCAAA GTGCCCATGT CTCCGCGGAA
ATGATGTCGT CCTGGGTCTG GGCCATTTCA ATCGGGGCAG GGGTGTCGGG CATCTTGCTG
AGCTGGTGGC TCAAGGTGCC GGTCGTGACG GCCTGGTCCG CACCGGGCAC GGCCTTGCTG
GTGACCTTGT TCCCCGCCAT CACGCTCGGG CAGGCCGTCG GGGCTTACCT GGTGTCGGCG
GTCATTATTT TCATCATTGG CGTGTCCGGT TATTTTGACA AGCTGGTGCA GGCCATCCCC
AAAGGCATTG CCAGCGCCAT GATGGCGGGC ATTTTGTTCC AGTTTGGCGT CGGCGCGTTT
CAAGCGGTCA CAGCGATGCC GCTCATCACC TTTTGCATGA TGGGCACTTA TTTGCTCTTC
AGGCGCTTGC TGCCGCGCTA TTGCCTGGTG ATTTTGCTGG TGATCAGTCT GGTGCTGGCG
GTGGCCCTGG AGGGCGTGAG CCTGGCCGGC GTGACATTCA CTCTGGCCAG CCCGGTGTTC
ATCACACCCG AGTGGACCTG GGGCGCAACC CTGAGCCTGG CGCTGCCGCT GGTGCTGGTC
AGCGTGACGG GGCAGTTCTT GCCGGGCATG GCCATCTTGC GCAGTTCGGG CTACAGCACG
CCGGCCCGTC CCATCATCAT CACGACCAGC CTGGCCTCGC TGGGCGTGGC ATTTTTCGGC
GGCATCACGA TTGTGATTGC GGCCATCACG GCGGCGCTTT GCACTGGCAA GGACGCGCAT
GAAGACGCCA CAAAACGCTA TGTGGCAGGC ATTGCCAACG GCGTGTTTTA CCTGGTGGGC
GGCTGCTTTG CCGGCACCAT CATCTTGTTT TTTGCAGCCT TGCCCAAAGC GCTGATCGCG
GTGCTGGCCG GACTGGCCCT GGTGGGCGCG ATTGGGGGTA GTCTGGCCGG TGCAATGAAC
GAAGCCGATC ACCGGGAGGC CTCGATCATC ACCTTCTTGG CCACAGCGTC GGGCATGACG
TTCTGGGGCC TGGGGTCGGC GTTCTGGGGA GTGGTCATTG GCGCGCTAGC CTATTTGCTG
CTGCATAAGC AATGGTTTCT TCCCGCGAAG GCGAGGCTTT GA
|
|---|
| Protein sequence | MKKDFSLSAV TAGFLAVLIS YAGPLVIFFQ AGQSAHVSAE MMSSWVWAIS IGAGVSGILL
SWWLKVPVVT AWSAPGTALL VTLFPAITLG QAVGAYLVSA VIIFIIGVSG YFDKLVQAIP
KGIASAMMAG ILFQFGVGAF QAVTAMPLIT FCMMGTYLLF RRLLPRYCLV ILLVISLVLA
VALEGVSLAG VTFTLASPVF ITPEWTWGAT LSLALPLVLV SVTGQFLPGM AILRSSGYST
PARPIIITTS LASLGVAFFG GITIVIAAIT AALCTGKDAH EDATKRYVAG IANGVFYLVG
GCFAGTIILF FAALPKALIA VLAGLALVGA IGGSLAGAMN EADHREASII TFLATASGMT
FWGLGSAFWG VVIGALAYLL LHKQWFLPAK ARL
|
|---|
| |