| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2085 |
|---|
| Symbol | |
|---|
| ID | 4689825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2218691 |
|---|
| End bp | 2220379 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639835096 |
|---|
| Product | peptidase C14, caspase catalytic subunit p20 |
|---|
| Protein accession | YP_982315 |
|---|
| Protein GI | 121604986 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.11018 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0186751 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAG GAATTGCTGT CAACATCGGG CTGAACTATG TCAACCCGGC CGCTTACAAC
GGATGGAACG GAGAGTTGGC GGGTTGCATC AACGACGCCC GCGACATGAA CCAGATCGCG
ACGCAGCTCG GCTATGCCGC TACCTTGATG ACCGACGCAG AGGCGTCGGC CTCCGAGGTG
ACGCGCGTCA TCGGCCAGGC GGCCCGCCAG CTGGCGGCGG GGGACATCTG CCTGGTGACC
TACTCCGGGC ACGGCTCCCA GATCAACGAC GTGACCGGCG ACGAGCCCGA CGGCAAGGAC
GAAACCTGGG TGCTCTGGGA CCGCCAGCTG CTCGACGATG AGCTGAACGG CCTGTGGTCC
AGCTTTGCGG CCGGCGTGCG CATTTTCGTG CTGTCAGACA GCTGCCACAG CGGAACGGTG
GCGCGCGTGA TGAGCTTCCA GAAAAAGTTC AAGAGCCCGG AGTTCGCCGC GCAGTACGAC
CGCCCGGTGA ATGCGCCGCC GCGCGTTCGC GCCGCCGATC CGGCAGCCGT CCAGGCCAAC
TACCTGGCCA ACCGGAGCAA CTACGAGGTC AGCCAATGGA CGCACCGGGC GTCGGTCAAC
GCCAGCGTGA CCCTGATTTC GGGCTGCCAG GACAACCAGC TGTCGTCCGA CGGCGACGCC
AACGGCCTGT TCACGCAGCG CCTGAAGGAA GTCTGGAACG GCGGCGCTTT CAGCGGCAGC
TACGCGCAGT TCCATTCGGC CATCGTGGCG CGCATGCCTT CGGACCAGAC GCCGAACCTG
TTCCGCACCG GCGTGGCGAA TCCGGCCTTC GATGCCGAGA AGCCGTTCAC GATTGGCGCG
GGCAGCGCGA GCGGCACGGG GGCTGGCGGT GGCCTGTCGA TCTCGGGGCC GTCGTCGTTC
GCCAATGGCA CAACGCCGCT CACCTTCTCG GTGTCCGTGC CTTCAGGCCA TTACTTCGCG
GTGGAAATCG CCACCGATGC CAGCCTGTTC AACAGCACGG CCAACGGCGC GCAGCGCAAC
GACAGCAATT TCTACGCGTC CTGGAAGGTC AGCCCGTTCC GCCAGGGCAG CTCGTTCATG
ATGCCGCTCG ATGCCTGGAA CCGCCTGCGC CAGGGGGCCG CAAGGCTTTA CTACCGCCTC
TGGTGCACCA GCAGTCCGAC CAGCTGGGTC AACTACCAGG TCACGACCAG CGACAGCAAC
GCGCAGTCCG CCCCCAGCGT TGCCCTGGTC GCGCAAACCC AGCCCGGCGG CGGCGATGCC
GGCGTGCCCG CCATCACCGC GCCGACCGCT TTCCCGGCCA ACGGCGCGGC GCCCCGGTTC
CAGGTCAACC CGGGGGCTGG CCGTTATTAC GCCGTCGAGG TTTCGACCAA CAGCTGGTAC
TTCACCGACC AGTACAGCGC GCAGCGCAAC GACAACAATT TCTACGGCTC GTGGAAGGTC
ACGCCCTTCC AGTCCTCGGC GCTGTACCCG GCGGCCTACA CGCTGCCGGC TGAAGTGTGG
AGCCGGCTGC GCGACAACGC CACGAATGGC CGGCTCTACT ACCGCATGTG GTGGACCGAG
TCGCCCACGC AATGGGTCGG GTATGGCTGC ACGACGCCCA ACAGCTCGGG CCAGAACGCA
CCGAGCTTTG CGCTCTCGCG GGAGTTCGAT ATGGATACGC TGGCTCAACA ATCGGACGGC
AGCAAGTAA
|
|---|
| Protein sequence | MAKGIAVNIG LNYVNPAAYN GWNGELAGCI NDARDMNQIA TQLGYAATLM TDAEASASEV
TRVIGQAARQ LAAGDICLVT YSGHGSQIND VTGDEPDGKD ETWVLWDRQL LDDELNGLWS
SFAAGVRIFV LSDSCHSGTV ARVMSFQKKF KSPEFAAQYD RPVNAPPRVR AADPAAVQAN
YLANRSNYEV SQWTHRASVN ASVTLISGCQ DNQLSSDGDA NGLFTQRLKE VWNGGAFSGS
YAQFHSAIVA RMPSDQTPNL FRTGVANPAF DAEKPFTIGA GSASGTGAGG GLSISGPSSF
ANGTTPLTFS VSVPSGHYFA VEIATDASLF NSTANGAQRN DSNFYASWKV SPFRQGSSFM
MPLDAWNRLR QGAARLYYRL WCTSSPTSWV NYQVTTSDSN AQSAPSVALV AQTQPGGGDA
GVPAITAPTA FPANGAAPRF QVNPGAGRYY AVEVSTNSWY FTDQYSAQRN DNNFYGSWKV
TPFQSSALYP AAYTLPAEVW SRLRDNATNG RLYYRMWWTE SPTQWVGYGC TTPNSSGQNA
PSFALSREFD MDTLAQQSDG SK
|
|---|
| |