| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2077 |
|---|
| Symbol | |
|---|
| ID | 4689942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2206425 |
|---|
| End bp | 2207804 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639835088 |
|---|
| Product | HNH endonuclease |
|---|
| Protein accession | YP_982307 |
|---|
| Protein GI | 121604978 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1403] Restriction endonuclease |
|---|
| TIGRFAM ID | [TIGR02646] conserved hypothetical protein TIGR02646 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.343386 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTGCA GCGAGAAACG AGCGCGCAAG CTGCTTGAAT CTGGCCGCGC GCGCGTCCAT
AAGTTGTTTC CTTTTGGCAT CCGGCTCGTT GACAGATTGG TTGAAGACAG TGTGTTTCAG
CCCCTACGGC TGTCGCTTGA TCCGGGGAGC AAAACCACGG GGCTGGCAGT TTGCCGGGTT
GCTGAAACCA TTGATGTGAC CACCGGGGAA ATTCAGCCCA CGATGCACAT CCAATTTTTG
ATGGAACTGA TGCATCGAGG TGCCACCATC AAGAAGTCGC TTGGCGCACG CTCGGCCATG
CGTCGGCGTC GTCGGGGCAA GCTGCGTTAC CGCGCACCGC GTTTTAGCAA CCGTCCAAAA
CCACAAGGCT GGCTCGCACC CAGTCTGCGT CACCGGGTTG AAACGACGAT GACGCAGGTC
AAACGCCTGT GTCGCCTCGC CCCGATCACG CATTTGGCGC AAGAGCTGGT GCGCTTTGAC
ATGCAGAAAA TGCAGAACCC GGAAATTTCG GGGGCCGAGT ACCAACAAGG CACATTGCAA
GGCTACGAAG TGCGTGAATA CCTGCTGGAG AAATTCAACC GCACTTGCGC CTACTGCGAC
GCGCAAAACG TCCCCTTGCA AATGGAACAC ATCCACCCCA AAGCAGCCGG CGGCACGAAC
CGGATTTCCA ATTTAGCGCT CGCCTGCCAA GCCTGCAACC AGAAAAAAGG TGTCCAGGAC
ATCAAGGACT TCTTGCTCAA AGACCCCAAG CGTTTGGCAA AAGTATTAAA ACAGGCCAAA
GCGCCATTAC TTGATGCAGC CGCCGTCAAC ACCACCCGAT GGACTTTGTT CGGCGCCCTC
AAGCAAACCG GCTTGCCGGT GGAAACAGGA ACCGGCGGAC AGACCAAATA CAACCGCTGC
CGCCTGAGCA TCCCCAAGAC TCACGCACTC GATGCCGCCT GCGTCGGACA GGTGCAGTCC
GTCAACAACA CAAACGCGCC CATGCTGCGC GTTATCTGCA CCGGACGCGT ATCGCGCAGC
AAAACACGCC TGGACAAGTA CGGTTTCCCT CGCACTTACC TGACCCACCA GAAAACAGCG
TTTGGCTTCA AGACCGGCGA CATGGTGATT GCCACCGTGC CCAAAGGCGT CAAGAAAGGC
ATTCACAAAG GCCGGGTGGC GATTCGACTC ACGGGAAGTT TCAACATTCA AACGGGCATC
GCCGGTGCGG CGACCGTTCA AGGCATTTCC TACAAGCATT GCCGCATCAC GCAGCGGGCT
GACGGGTATG GTTATTCACA CAGAGCGCAA ACAAAAAAGG AATGCGGGAA CAAGGAGTGT
GCTTTGCACA CCGCGCTATC CATCCCCGGC CTGAAGGCCG AGGTTTCCCG CGCAATTTGA
|
|---|
| Protein sequence | MPCSEKRARK LLESGRARVH KLFPFGIRLV DRLVEDSVFQ PLRLSLDPGS KTTGLAVCRV
AETIDVTTGE IQPTMHIQFL MELMHRGATI KKSLGARSAM RRRRRGKLRY RAPRFSNRPK
PQGWLAPSLR HRVETTMTQV KRLCRLAPIT HLAQELVRFD MQKMQNPEIS GAEYQQGTLQ
GYEVREYLLE KFNRTCAYCD AQNVPLQMEH IHPKAAGGTN RISNLALACQ ACNQKKGVQD
IKDFLLKDPK RLAKVLKQAK APLLDAAAVN TTRWTLFGAL KQTGLPVETG TGGQTKYNRC
RLSIPKTHAL DAACVGQVQS VNNTNAPMLR VICTGRVSRS KTRLDKYGFP RTYLTHQKTA
FGFKTGDMVI ATVPKGVKKG IHKGRVAIRL TGSFNIQTGI AGAATVQGIS YKHCRITQRA
DGYGYSHRAQ TKKECGNKEC ALHTALSIPG LKAEVSRAI
|
|---|
| |