| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2054 |
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| Symbol | |
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| ID | 4689704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2180351 |
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| End bp | 2182132 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639835065 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_982284 |
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| Protein GI | 121604955 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCAAAA CCCCAAAACT GACGCTGCTC CGCAGGCTTG CGCGCGTGTG GCCGTACTTC
AGCGGGTCGC GGGCGGGCTG GGCGCTGGCC ATAGGCGCGA CCATCGTCGC CTCAGCGACC
GAGCCTTTTG TTCCGGCCTT GCTCAAACCC TTGCTGGACC GTGGCTTTCA GCGGGACTCT
TTCAACCTCT GGCTGGTGCC TGTGACGCTG ATGCTGCTGT TCATCATCCG GGGGCTGTCG
GGATTCCTGG CGCAGTTCGC GCTGGCCAAG GTGACCAATG ACGGGCTGCT CCAGCTGCGC
AAGGCAATGT TTGACAAGCT TCTGAGCGCG CGGCTGACCC TGTTTGCCGA CCAAAGCTCC
AGCATGATTG CCAATACCGT CGTGTACGAA GTGTTCAACG GCTCATCCTC GCTGATCAAC
GCCATCATGC GGCTTGCGCG CGATGTGCTG ACGCTGCTGG CACTGATCGG GTATCTGGTT
TACCTGAACT GGAAACTGAC GCTGATCGTC GGCTTTCTGT TTCCTGCGGT CGCGTTCGTC
ATCCAGGTCT TGTCCAAACG CCTGTACCGC CTGACCAAGG AAAGCCAGAC GGCCACGGAC
AGCCTGGCCT ACGTGGTTGA AGAAAATGTC ATGGCGCATC GCGACGTTCG CCTGCATGGT
GCGCAGGCCA GCCAGGCCAG CCGCTTCGAC AGCCTGAGCC ATTCGCTGCG TCGCCTGTCG
ATGAAATCGA CGGCGGCCTA TGCCGGCATG AGTGCCATCA CGCAGGTGCT TGCAGCCATG
GCGCTGTCGG CCGTCATTTC AATTGCACTG ATGCAAAGCG CGGAAAACAC CACCACGGTG
GGCGGCTTCG TGGCTTTTGT GACCGCCATG CTGCTGCTGA TCGCGCCCAT CAAAAGCCTG
TCGGATGCCG CCACGCCGGT CACGCGCGGA CTGGCCGCCC TGGAGCGCGG CCTGGACCTC
ATGGACTTGA CGCCCAACGA AACCAGCGGT TCTTTCGTGA AAGCCAGGGC GGTTGGTGCG
ATTGAATTTT CCAGTGTCAC CGTCGCCTAC AAGACCGACA CCACGCCCGT CCTGCAGGAC
TTCAACCTTT GCGTGACAGC CGGCGAAACG CTCGCCATCG TGGGCGCATC GGGTTCCGGA
AAGACAACGC TGGTGAACCT GCTGCCCCGG TTTGTTGAAA TAAGCGCTGG CAGCATCACC
CTGGATGACC AGGACATTCG CGACTGGAAC CTGGCCTCGC TGCGTTCGCA GTTTGCCTTT
GTCAGCCAGC ATGTCGTCAT GCTCAACAGC AGCATTGCCG AGAATGTGGC CCTTGGGCAG
CCCATTGACC CGGCAAGGGT CAAGGAATGC CTAGAGGCAG CCAACCTGGC TTCGTTGCTG
GCCGGCCTTC CCGAGGGCCT GGACACGGTT CTTGGCCACA ACGCCATGCA GCTTTCTGGC
GGCCAGCGCC AGCGGCTGGC GATTGCGCGC GCGCTTTACA AGGATGCGCC CATCCTGGTT
CTTGATGAAG CCACCTCGGC GCTTGACACC GAATCGGAAA TCGCCGTGCA GGACGCGGTC
AGGCGGCTGA CCTCGGGGCG CACATCGCTG GTGATCGCGC ACCGGCTGTC CACCATCCAG
AATGCTGACC GCATCATCAT GATGGATGCG GGACGGATTA TCGAATCAGG CACCCACAAG
GAACTGCTGG CGAAAAATGG GGCTTTCGCG CACCTTTACA GGCTGGGCTT TCAGTCATCC
TCACCTGTCC AGGCCGCGCC GATTCAGCCT TTGAATGTGT AG
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| Protein sequence | MTKTPKLTLL RRLARVWPYF SGSRAGWALA IGATIVASAT EPFVPALLKP LLDRGFQRDS
FNLWLVPVTL MLLFIIRGLS GFLAQFALAK VTNDGLLQLR KAMFDKLLSA RLTLFADQSS
SMIANTVVYE VFNGSSSLIN AIMRLARDVL TLLALIGYLV YLNWKLTLIV GFLFPAVAFV
IQVLSKRLYR LTKESQTATD SLAYVVEENV MAHRDVRLHG AQASQASRFD SLSHSLRRLS
MKSTAAYAGM SAITQVLAAM ALSAVISIAL MQSAENTTTV GGFVAFVTAM LLLIAPIKSL
SDAATPVTRG LAALERGLDL MDLTPNETSG SFVKARAVGA IEFSSVTVAY KTDTTPVLQD
FNLCVTAGET LAIVGASGSG KTTLVNLLPR FVEISAGSIT LDDQDIRDWN LASLRSQFAF
VSQHVVMLNS SIAENVALGQ PIDPARVKEC LEAANLASLL AGLPEGLDTV LGHNAMQLSG
GQRQRLAIAR ALYKDAPILV LDEATSALDT ESEIAVQDAV RRLTSGRTSL VIAHRLSTIQ
NADRIIMMDA GRIIESGTHK ELLAKNGAFA HLYRLGFQSS SPVQAAPIQP LNV
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