Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2050 |
Symbol | tolB |
ID | 4689778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 2176027 |
End bp | 2177316 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639835061 |
Product | translocation protein TolB |
Protein accession | YP_982280 |
Protein GI | 121604951 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATCA CACCATCTTT CAGCCGCCGA AGCGTTGTCA GCCTGTTGGC GGCCGGCGCA TTTTCATCCA TGTCGGCATT CGCCCAGTTT CGCGTGGAAG TGTCGGGCGT TGGCATGACT CAGTTGCCCA TCGCCATTGC ACCCTTCAGG GGTGAAGCGC AATCACCACA AAAAATCGGC AGCATCGTCA AGGCTGATCT TGAGCGGAGC GGCATGTTTC GCGGTGTTGA CGCTGGAGGC GTCGTGGCAG ATGAAAACAC CCGTCCCGAC CTGGCAAGCT GGCGGCAAAA AGGCGCCGAT GCGATGGTGA CCGGCAGTGT TTCACCGCTT GCGGACGGGC GCTTTGATGT TCGCCTTCGG TTGTGGGACG TTGTGCGCGA GCAGGATCTT GGCGGCCAGA GCTACACCGT CACAAAATCC GACCTGCGTC TGTCTGCGCA CCGAGTCTCT GATTTTGTGT ACGAAAAGCT GACGGGTGAA AAAGGCATTT TTTCCACGCG GATTGCCTAC GTGACCAAGG CCGGCCAGCG CTACACCTTG TGGGTGGCTG ATTCTGATGG AGAAAGTGCC CAGTCAGCCT TGGCAAGTCC TGAACCCATC ATTTCTCCCG CATGGTCGCC CAGTGGCGCC CAATTGGCTT ATGTGTCCTT TGAGTCCCGC AAGCCAGTGA TTTATTCGCA TGACGTAGCA ACCGGAAAGC GGCGCTTGCT GGCTAATTTC AGGGGCTCCA ACAGCGCGCC TGCCTGGTCC CCGGATGGCA GCCAACTGGT TGCCACGTTG AGCCAGGCGG GCGGCTCGCA AATTTATTCA ATCGGCCTGA ATGGCGGTGA TCCGAAGCGG CTGACACAGT CATCGAGCAT TGATACCGAG CCCGCATTTT CCCCGGATGG GCGTTTGATT TATTTTGTCA GCGACCGGGG CGGCTCGCCG CAGATTTACC GAATGAGTCC TGCGGGCGGC AACGCAGAAA GAGTTACCTT CACTGGCAGT TACAACATAT CGCCGGTGGT GAGTCCCGAT GGAAGATGGC TGGCATATGT TTCCCGAGTC GGCGGCGGAT TCAAGTTGCA TGTCATGGAA CTCTCCACCG GAACGGTGAC GTCGATCACC GATACTTCTG CCGATGAAAG CCCGAGTTTC GCCCCGAACA GCCGCCTGAT TGTTTATGCA ACACAGCAGC AGGGCAAGGA AGCGCTGATG ACAACCACGC TGGACGGCAA GATAAAAGCA CGTTTGTCCG GAGCAGGCGG TGACATTCGC GAGCCTGACT GGGGTCCGTT CCAGCGATAG
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Protein sequence | MSITPSFSRR SVVSLLAAGA FSSMSAFAQF RVEVSGVGMT QLPIAIAPFR GEAQSPQKIG SIVKADLERS GMFRGVDAGG VVADENTRPD LASWRQKGAD AMVTGSVSPL ADGRFDVRLR LWDVVREQDL GGQSYTVTKS DLRLSAHRVS DFVYEKLTGE KGIFSTRIAY VTKAGQRYTL WVADSDGESA QSALASPEPI ISPAWSPSGA QLAYVSFESR KPVIYSHDVA TGKRRLLANF RGSNSAPAWS PDGSQLVATL SQAGGSQIYS IGLNGGDPKR LTQSSSIDTE PAFSPDGRLI YFVSDRGGSP QIYRMSPAGG NAERVTFTGS YNISPVVSPD GRWLAYVSRV GGGFKLHVME LSTGTVTSIT DTSADESPSF APNSRLIVYA TQQQGKEALM TTTLDGKIKA RLSGAGGDIR EPDWGPFQR
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