Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1985 |
Symbol | |
ID | 4688106 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 2108151 |
End bp | 2108822 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639834993 |
Product | phosphoglycolate phosphatase |
Protein accession | YP_982215 |
Protein GI | 121604886 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.554471 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCAAAC CCTACGACCT CATCATGTTC GACCTGGACG GCACGCTGGT CGAAACCGCG CCGGAAATTG CCGACGCAGT GAACGACACG CTGCGCCGCT TCGACCTGCC CGAAGTGACG CAGCAGCAGG TCAACGACTG GATCGGCCAC GGCACGCGCG AACTGCTGAT CCAGGCGCTG GCCTTCAGCG GAAAAACCGA CCTGGTCACC ATCCGCCACA GCAAGAGCCT GACGCTGATC GCCGGCGAGT TCGACCGCTA CTACAAGCGC CGCTGCGGCA GCCGCAGCCG CCTGTATCCG CAGGTGCGCG AAACGCTGGT CGCCCTGCGC GGGCGCGGCG TGAAGCTGGC CGTGGTCACC AACAAGGAAA GCCGCTACAC GGCCACGGTG CTGGACGCCC ACCAGTTGAC GCCGCTGTTC GACCAGATCG TCAGCGGCGA CACGCTGCCG ACCAAGAAAC CCGACCCGGC GGGCATCCAC AGCTGCCTGA CGGCGTTCGG CGTGCCGCGC GCGCGGGCGC TGTTTGTCGG CGATTCGTCG ATTGACGTGG CCACGGCCCG CAATGCGGGG CTGTCGGTCT GGGCGCTGCC CTATGGCTAC AACATGGGCC AGCCCATCGA AGCCTGCACG CCGGACCGGG TGATCGCCGA TTGCTCGGCG CTCCTTGATT GA
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Protein sequence | MRKPYDLIMF DLDGTLVETA PEIADAVNDT LRRFDLPEVT QQQVNDWIGH GTRELLIQAL AFSGKTDLVT IRHSKSLTLI AGEFDRYYKR RCGSRSRLYP QVRETLVALR GRGVKLAVVT NKESRYTATV LDAHQLTPLF DQIVSGDTLP TKKPDPAGIH SCLTAFGVPR ARALFVGDSS IDVATARNAG LSVWALPYGY NMGQPIEACT PDRVIADCSA LLD
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