Gene Pnap_1985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1985 
Symbol 
ID4688106 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2108151 
End bp2108822 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content67% 
IMG OID639834993 
Productphosphoglycolate phosphatase 
Protein accessionYP_982215 
Protein GI121604886 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.554471 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAAAC CCTACGACCT CATCATGTTC GACCTGGACG GCACGCTGGT CGAAACCGCG 
CCGGAAATTG CCGACGCAGT GAACGACACG CTGCGCCGCT TCGACCTGCC CGAAGTGACG
CAGCAGCAGG TCAACGACTG GATCGGCCAC GGCACGCGCG AACTGCTGAT CCAGGCGCTG
GCCTTCAGCG GAAAAACCGA CCTGGTCACC ATCCGCCACA GCAAGAGCCT GACGCTGATC
GCCGGCGAGT TCGACCGCTA CTACAAGCGC CGCTGCGGCA GCCGCAGCCG CCTGTATCCG
CAGGTGCGCG AAACGCTGGT CGCCCTGCGC GGGCGCGGCG TGAAGCTGGC CGTGGTCACC
AACAAGGAAA GCCGCTACAC GGCCACGGTG CTGGACGCCC ACCAGTTGAC GCCGCTGTTC
GACCAGATCG TCAGCGGCGA CACGCTGCCG ACCAAGAAAC CCGACCCGGC GGGCATCCAC
AGCTGCCTGA CGGCGTTCGG CGTGCCGCGC GCGCGGGCGC TGTTTGTCGG CGATTCGTCG
ATTGACGTGG CCACGGCCCG CAATGCGGGG CTGTCGGTCT GGGCGCTGCC CTATGGCTAC
AACATGGGCC AGCCCATCGA AGCCTGCACG CCGGACCGGG TGATCGCCGA TTGCTCGGCG
CTCCTTGATT GA
 
Protein sequence
MRKPYDLIMF DLDGTLVETA PEIADAVNDT LRRFDLPEVT QQQVNDWIGH GTRELLIQAL 
AFSGKTDLVT IRHSKSLTLI AGEFDRYYKR RCGSRSRLYP QVRETLVALR GRGVKLAVVT
NKESRYTATV LDAHQLTPLF DQIVSGDTLP TKKPDPAGIH SCLTAFGVPR ARALFVGDSS
IDVATARNAG LSVWALPYGY NMGQPIEACT PDRVIADCSA LLD