Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1907 |
Symbol | |
ID | 4689049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 2029847 |
End bp | 2031034 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639834914 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_982138 |
Protein GI | 121604809 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.780883 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCACTC GTCGTCTGGT CCTCACCCGC AGTGCTGCCG TGATGGGCAC GGCTTGCTCC GGCTTGCTGC TGCCCGAACT CGTGCGCGCC CAGTCGGGCA AGGTCCGGGT GGGCTTCATG CTTCCCTATA CGGGCACCTT CAGCCAGCTT GGCGTGGCGA TTGAAAACGG CTTTCGCATG GCCATCAATG AACAGGGCGG CAAGCTGGGC GGACGCGAGA TCGAATACTT CAAGGTCGAT GACGAGTCGG AGCCCTCCAA GGGCATTGAA AACGCCAGCA AGCTGGTGCA GCGCGACAAG GTCGATGTGC TGGTCGGCAC CGTGCATTCG GGCGTGCAGA TGGGTATCCA GAAAGTTGCC CGCGACAGCG GCGTGCTGTG CCTGATTCCC AATGCAGGCG TGCATGCCGC AACGCGCGCC CTGTGCGCGC CGAATGTGTT CCGCACGTCC TTCAGCAATT CGCAGCCGAC CCGGGCGCTG GGCCAGGCCA TGGTCGCCAG GGGCCACAAG AAAGCGGTCT GGATCACCTG GAAATACGCG GCTGGCGACG AAGCCTTCGA AGGCTTCAAG GAAAGCTATA CCGCAGCGGG CGGCACCATC GTCAAGGAAC TGGGACTGCC CTTCCCCAAT GTTGAGTTCC AGGCGCTGCT GACCGAAATC GCCGCACTCA AGCCCGATGC GGTGGCCTGT TTCTTTGCCG GCGGTGGCGC GGCCAAGTTC ATCCGCGACT ATGCCGCCGC AGGCCTGAAA GGCAAGATTC CCCTGTACGG ATCGGGCTTC CTGACCGAAG GCGTGCTCGA CGCCGCCGGC CCTGCGGCAG AAGGCATCGT CACCACCATG CACTACAGCG ACTCGCTCGA CACGCCGCGC AACAAAAAAT TCCGTCTTGA TTACGTGAAG GCGTTTCGCA GCCAGCCCGA CGTGTACGCC GTGCAGGGTT ACGACACCGG CCTGTTGCTC ATCCAGGGGG CGAATGCCGT CAAGGGCGAC CTTGGCGCGA AGCCGGCCCT GTACAAGGCC ATGGAAGGCG CCACCATCGA CAGCCCGCGC GGAAAGTGGA CCATGAGCAA GGCGCATAAC CCGGTGCAGG ACATCTACCT GCGCGTGGTT GAAAACAAGG AAAACAAGGT GATTGGCATT GCCGCCAAAG CGCTTTCCGA CTCGGGCCTT GGCTGCAAGA TGGCTTGA
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Protein sequence | MPTRRLVLTR SAAVMGTACS GLLLPELVRA QSGKVRVGFM LPYTGTFSQL GVAIENGFRM AINEQGGKLG GREIEYFKVD DESEPSKGIE NASKLVQRDK VDVLVGTVHS GVQMGIQKVA RDSGVLCLIP NAGVHAATRA LCAPNVFRTS FSNSQPTRAL GQAMVARGHK KAVWITWKYA AGDEAFEGFK ESYTAAGGTI VKELGLPFPN VEFQALLTEI AALKPDAVAC FFAGGGAAKF IRDYAAAGLK GKIPLYGSGF LTEGVLDAAG PAAEGIVTTM HYSDSLDTPR NKKFRLDYVK AFRSQPDVYA VQGYDTGLLL IQGANAVKGD LGAKPALYKA MEGATIDSPR GKWTMSKAHN PVQDIYLRVV ENKENKVIGI AAKALSDSGL GCKMA
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