Gene Pnap_1889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1889 
Symbol 
ID4688768 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2012582 
End bp2013298 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content63% 
IMG OID639834896 
ProductABC transporter related 
Protein accessionYP_982120 
Protein GI121604791 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4181] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.236618 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.569597 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTGAAG TTTCTTCCAG GCTGTCTGGG TCATTGGAGC CTGCCAGTTC TCCAATTGTT 
TGCGTTGAGC ATGTTTTCAA GTCGGTCACC GACTCGACCG GCACCTTGAG CATTTTGCGC
GACATTGACT TTGCGCTGAA TGCGCGTGAA ACCGCCGCCA TTGTCGGCGC ATCGGGCTCG
GGCAAAAGCA CGCTGCTGAC CATCATCGCC GGGCTGGACA CGCCCACGAA GGGCACGGTG
CGGCTGGCGG GCCAGGATAT CTTTGCGCTC AGCGAGGACG ACCGCGCGGC CCTGCGGGCG
CAAAAAGTCG GTTTCGTGTT CCAGAGCTTT CAGCTCATGG CCAATTTGAC GGCGCTGGAA
AATGTCATGC TGCCGCTCGA ACTCTCTGGC GTCAAACAGG CCAGGGCGCT GGCGAGCGAC
ATGCTCAAGC GGGTCGGCTT GAGCGAGCGG CTCGGCCACT ACCCGAAGGT GCTGTCGGGC
GGTGAGCAGC AGCGCGTGGC GCTGGCGCGC GCCTTTGTCG TCAAGCCGGC GGTGCTGCTG
GCCGACGAGC CGACCGGCAG CCTGGACTTT GCCACCGGCG AGACGGTGAT GAAGCTGATG
TTCGAGCTGA ACCAGGAACT CGGCACGACC TTGGTGCTGG TCACGCACGA CCCGGCCATT
GCGGCGCGCT GCCAGCGGCG CATCACCATC GAAGCCGGGC AGGTCGTGGT TTCATGA
 
Protein sequence
MGEVSSRLSG SLEPASSPIV CVEHVFKSVT DSTGTLSILR DIDFALNARE TAAIVGASGS 
GKSTLLTIIA GLDTPTKGTV RLAGQDIFAL SEDDRAALRA QKVGFVFQSF QLMANLTALE
NVMLPLELSG VKQARALASD MLKRVGLSER LGHYPKVLSG GEQQRVALAR AFVVKPAVLL
ADEPTGSLDF ATGETVMKLM FELNQELGTT LVLVTHDPAI AARCQRRITI EAGQVVVS