Gene Pnap_1879 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1879 
Symbol 
ID4686515 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2003180 
End bp2004595 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content60% 
IMG OID639834886 
ProductHflK protein 
Protein accessionYP_982110 
Protein GI121604781 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01933] HflK protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.239775 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTTGA ATCCCGTGCT GCAGACGCTG ACGAACTTTC CGGGTCGGCT CAAACAACGC 
GCCCAAGGCA TATTCAATCT CAATGATCCG CGCTGGGGCC GGGATGAAGA TAAATCATCG
TCTGACGGCA GCAAGCCTGA CGGACCCCGC GAAGACCGGC AGCCTCCCAA ACCCGGTAAT
CGCCCACAGG GTCAGGGGCC GAATCAGGGG CCTCCAGATC TGGATGAACT CTGGCGCGAT
TTCAACCGAA AATTGGGCGG CTTGTTTGGC GGCGCCAAAA ATGGCGGCAA CCGGGGTGGC
CTTGGCGGTG GCAACAAGGG CAATGGCAGC AATGGCGGGG GATTTCAGCC TGACATGAAA
AACGCAGGTA TTGGCGTTGG CCTGATCGCC GCCGTGGTGG CGCTGATCTG GCTGGGAACC
GGGTTTTTCA TCGTCCAGGA AGGTCAGCAA GCGGTGATCA CCCAGTTCGG CAAATACCAG
TCAACGGTGG GTGCCGGTTT TAACTGGCGT TTGCCATATC CGATACAGCG TCACGAAATC
GTGGTGGTGA CCCAGATCCG GTCGGTCGAT GTAGGCCGTG ACACCATCCT GAAGGCAACC
GGTCTGCGGG ACTCGGCCAT GCTGACTGAA GACGAGAATA TTGTCGAGAT CAAGTTTGCC
GTGCAATACC GCCTGAACAA TGCACGCGCC TATCTGTTCG AGAGCAAGGA TCCTTCCGCC
GCAGTGGTTC AGGCGGCTGA AACCGCGGTG CGTGAAGTGG TTGGCAAAAT GAAAATGGAC
ATGGCTCTTG CCGAGGAGCG CGACCAGATC GGCCCGCGCG TTCGGGTGCT CATGCAGACC
ATCCTGGACC GCTACAAGGT GGGTGTCGAA GTGGTCGCCA TCAATCTGCA GCAAAGTGGT
GTGCGCCCGC CCGAGCAGGT GCAGGCCGCA TTTGATGATG TGCTCAAGGC CGGACAGGAA
CGCGAGCGTG CCAAGAACGA AGCCCAGGCC TATGCCAATG ACGTCGTGCC CCGCGCCGTC
GGTTCCGCAT CGCGGCTGAA GGAAGAGGCC GATGCCTACA AGGCTCGTAT CGTGGCGCAG
GCACAGGGTG ATGCGCAGCG TTTCAGCTCG GTCCTGGCCG AATACCAGAA AGCACCGCAG
GTAACCCGTG ATCGCATGTA CACGGACGCC ATGCAGCAGG TCTATACCAA TGTCACCAAG
GTGCTGGTTG AGTCCCGCCA GGGGTCCAAC CTGTTGTACC TGCCCCTTGA CAAAATCATG
CAGATGTCCG GGCAGGCTGG TGCATCGGCA GCCTCCGATC CGTTGCTTGC GCCCGGTGGG
GCCACATCTC CCGCAGCGCA GCCGCCCGCC AATGGCCTGC CTGTCGATTC CCGTGCGCGC
GATACCTCCC GCACCCGCGA ACGTGAAACC CGCTAA
 
Protein sequence
MNLNPVLQTL TNFPGRLKQR AQGIFNLNDP RWGRDEDKSS SDGSKPDGPR EDRQPPKPGN 
RPQGQGPNQG PPDLDELWRD FNRKLGGLFG GAKNGGNRGG LGGGNKGNGS NGGGFQPDMK
NAGIGVGLIA AVVALIWLGT GFFIVQEGQQ AVITQFGKYQ STVGAGFNWR LPYPIQRHEI
VVVTQIRSVD VGRDTILKAT GLRDSAMLTE DENIVEIKFA VQYRLNNARA YLFESKDPSA
AVVQAAETAV REVVGKMKMD MALAEERDQI GPRVRVLMQT ILDRYKVGVE VVAINLQQSG
VRPPEQVQAA FDDVLKAGQE RERAKNEAQA YANDVVPRAV GSASRLKEEA DAYKARIVAQ
AQGDAQRFSS VLAEYQKAPQ VTRDRMYTDA MQQVYTNVTK VLVESRQGSN LLYLPLDKIM
QMSGQAGASA ASDPLLAPGG ATSPAAQPPA NGLPVDSRAR DTSRTRERET R