Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1863 |
Symbol | |
ID | 4686469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 1985933 |
End bp | 1987939 |
Gene Length | 2007 bp |
Protein Length | 668 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639834870 |
Product | helicase c2 |
Protein accession | YP_982094 |
Protein GI | 121604765 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1199] Rad3-related DNA helicases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.879395 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATCTTG CGTTTGAAGT TGACGAGGCT TTTTCTCCCG GAGGTATCCT TTCGCGGGCG ACCGAACACT TTGTTCCACG CAGCGGCCAG AAAGAGATGG CACTGGCGGT GACACATGCC ATTGAAGACA GGCGTTCTCT GGTCGTGGAA GCCAGTACTG GCGTGGGTAA AACCTTTTCC TATCTGGTTC CAGCCCTGTT GAGCGGCGAG CGCATCCTGC TGTCAACTGC AACCAAGGCA TTGCAAGACC AGCTTTTCGG TCGTGATTTG CCTCGCCTGG TTGAAGCGCT TGAGTTGCCG GTGCGAACGG CCCTGCTCAA AGGCCGTGGC AGCTATTTAT GCCTGCATCG CATGGAAATG GCGCGACAGG AAACTTGTCT GCCAGAGGGC GTATCAGTAC GTTCGCTGGC AAGAGTGGAG CAATGGTCAC AGGTGACAAG AACAGGTGAT CTTGCAGAAC TTCCTGGCCT TGATGAGCGT TCGCCCATGA TTCCCCTGGT GACCTCGACA AGGGACAATT GCCTGGGCTT GCAATGTCCG CGGTTTCGAG CTTGCCATGT CAACCTGGCC CGTCGAGAGG CGATGGCCGC CGATGTCGTT GTCATAAATC ATCATCTTTT TTTTGCCGAC TTGGCCGTTC GCGAATCCGG CGTGGCCGAG TTGCTGCCTT CGGTGCGGAT TGCCATTTTT GATGAAGCAC ATCAATTGAA CGAAACCGGC GTGCAGTTTC TAGGCAGCAA CCTGACGACC GGCCAGTTGC TGGATTTTTC CCGGGACATG CTGGCAGCCG GGCTGCAACT GGCCCGTGGG TTGGTTGACT GGCAGGAAAT CGTTGTTGCC ATAGAAAGAG CTGCGCGTGA ATTGCGTCTT TGCGCTGGCA AGCACTATCC TGGAACCAGG CTGCGCTGGA CTGGTGAGAT TCCAGAAGGC CTGCCTGCCA ATGATTGGCA ACATGCCCTG GAGGCTGTCC ATGCATCTTG TCTGCAGGCT TGCGCAGCGC TCGACACGGT CAGCGAAATT GCACCAGATT TTGTCCGGCT CCATGAGCGC GCAGCTCAAC TGGCAGAGCG AGTGGAGACC TTCGTCAATG TCTGCGAACC CGGCTTTGTA CGTTGGCTCG ACGTGGGAAT GCAGTTGCGT CTGGTTGAGT CGCCGCTGGA TATTTCAAGG GCGGTAAAAA GCAAAATGCT GGGTGTGTCA GGTGAGAGCG AAAAAACCTG GATTTTCACG TCAGCCACGC TGGGTGATGA TGAAAAACTC AGCTGGTTTA CCCAGCCTTG TGGTCTTGAA GACGCTGATG TGCTGCGGGT TGGAAGTCCT TTCGATTATG AACGCCAGGC CGCGCTGTAT GTGCCGCCCA GCTTTCCCAA GCCGGGAGAC CCGCTCCATA GCACAAAGGT AGCCGAATGC GCGGCAGTCT GGTCGCGTCA GCTGGGCGGA CGGACCATGG TGCTGACAAC CACCTTGCGT GCATTGCGGG CGATTGGAGA AGCACTGCAG GCGGCTTTTG ATCAGTCAGG AGACTTGCAG GTTCTGGTGC AGGGCGGCAT GCCCAAACGC GCCCTGATTG AACGTTTTCG CGAAGGCGAT TCGCTGGGTG GAAAAGGCTG CGTCCTGGTT GCGTCGGCAT CGTTTTGGGA GGGTATTGAC GTTCCGGGCG ATGCGCTGCA ACTGGTTATT ATTGACAAAC TGCCTTTTCC TCCACCCAAC GACCCTCTGG CTGAAGCCAG GGCAAAGCTG CTGGAATCGC AAGGACGCAG TCCCTTTACC AATTATTTCC TGCCAGAAGC CGCAGTAGCA CTTAGACAGG GTGCCGGCCG TCTGATCCGC AGGGAAACCG ATCAAGGCGT TCTGGTGGTC TGTGACAGTC GCCTGGTTTC CATGGGTTAT GGAAGGCGGC TTATCAAGGC ATTGCCGCCC ATGCAAAGAC TCGAATCGGA GCAGGCCTTG ATGGCCAGAC TGGGTAGTCT TACCAGAACT TGTACCACGG ATTGTCCGCA GTCCTGA
|
Protein sequence | MNLAFEVDEA FSPGGILSRA TEHFVPRSGQ KEMALAVTHA IEDRRSLVVE ASTGVGKTFS YLVPALLSGE RILLSTATKA LQDQLFGRDL PRLVEALELP VRTALLKGRG SYLCLHRMEM ARQETCLPEG VSVRSLARVE QWSQVTRTGD LAELPGLDER SPMIPLVTST RDNCLGLQCP RFRACHVNLA RREAMAADVV VINHHLFFAD LAVRESGVAE LLPSVRIAIF DEAHQLNETG VQFLGSNLTT GQLLDFSRDM LAAGLQLARG LVDWQEIVVA IERAARELRL CAGKHYPGTR LRWTGEIPEG LPANDWQHAL EAVHASCLQA CAALDTVSEI APDFVRLHER AAQLAERVET FVNVCEPGFV RWLDVGMQLR LVESPLDISR AVKSKMLGVS GESEKTWIFT SATLGDDEKL SWFTQPCGLE DADVLRVGSP FDYERQAALY VPPSFPKPGD PLHSTKVAEC AAVWSRQLGG RTMVLTTTLR ALRAIGEALQ AAFDQSGDLQ VLVQGGMPKR ALIERFREGD SLGGKGCVLV ASASFWEGID VPGDALQLVI IDKLPFPPPN DPLAEARAKL LESQGRSPFT NYFLPEAAVA LRQGAGRLIR RETDQGVLVV CDSRLVSMGY GRRLIKALPP MQRLESEQAL MARLGSLTRT CTTDCPQS
|
| |