| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1854 |
|---|
| Symbol | |
|---|
| ID | 4688215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 1974599 |
|---|
| End bp | 1975828 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639834860 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_982085 |
|---|
| Protein GI | 121604756 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.579618 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAA CCTCGACCGA CAAAAACAAA ATCAAATTCC TCCTCCTGGA AGGCATTCAT
CCTTCGGCCA TTGATGTGCT CAAGACCGCT GGTTATACCC AGATTGAAAG CCTGGCAGGC
GCTTTGCCTG ACGACGAGCT CAAGCGCAAG ATTGCAGACG TGCATTTTGT CGGCATCCGC
TCGCGTACCC AACTCACCGC CGAAGTGTTT GCCCACGCCT CAAAGCTTGC CGCTGTCGGC
TGCTTTTGCA TAGGCACCAA CCAGGTGGAC CTGCAAGCGG CACGCGAGCG CGGCATTGCC
GTGTTCAACG CACCGTTTTC CAATACCCGT TCCGTCGCTG AACTGGTATT GGCCGAGGCG
ATTCTGCTGC TGCGCGGCAT CCCCGAGAAA AGCGCCGTGG CGCATCGGGG CGGCTGGCTG
AAGTCGGCCG AAAACGCTTA TGAGATTCGC GGCAAGACAC TGGGCATCAT TGGTTACGGC
TCCATCGGAA CCCAGCTCTC GGTGCTGGCC GAGGGACTGG GCATGCGCGT GGTGTTTTTT
GATGTGGTCA CCAAGCTTCC CCTGGGCAAT GCGCAGCAGG TCGCCAGCCT GAAGGATTTG
CTGGCGCAGT CTGACGTGGT CACCTTGCAT GTCCCCGAAA CCCAAAGCAC CCAATGGATG
ATTGGCGCTG CAGAAATTGC GTCAATGAAG TCGGGCAGCG TGCTGATCAA TGCCTCGCGC
GGCACGGTGG TCGAGATTGA GCCGCTGGCC GAAGCCCTGC GCCAGAAAAA ATTGCTGGGC
GCGGCGATTG ATGTGTTTCC GGTCGAGCCG CGAAGCAACA AGGACATGTT CGAGTCGCCC
CTGCGCGGCC TTGACAATGT GATTTTGACG CCACATGTTG GCGGTTCGAC GATGGAGGCG
CAGGCGAACA TTGGCATCGA GGTCGCTGAA AAACTGGTCA AGTACAGCGA CAACGGCACC
TCGACGTCTT CCGTCAACTT TCCTGAAGTG GCCTTGCCGG CCCATCCGGG CAAGCACCGC
CTGCTGCATA TTCACCGCAA CGTGCCGGGT GTGCTGTCGG AAATCAACCG GGTGTTTTCC
GACAACCACA TCAACATTGC CTCGCAGTAC CTGCAGACCA ATGAGGCCAT CGGTTATGTG
GTGATCGACA TTGATGCGGC GCATTCCGAC ATGGCCCTTG CCAAGCTGGC GAATGTTCCA
GGCACCATTC GCAGCCGCGT CCTTTTTTAA
|
|---|
| Protein sequence | MTKTSTDKNK IKFLLLEGIH PSAIDVLKTA GYTQIESLAG ALPDDELKRK IADVHFVGIR
SRTQLTAEVF AHASKLAAVG CFCIGTNQVD LQAARERGIA VFNAPFSNTR SVAELVLAEA
ILLLRGIPEK SAVAHRGGWL KSAENAYEIR GKTLGIIGYG SIGTQLSVLA EGLGMRVVFF
DVVTKLPLGN AQQVASLKDL LAQSDVVTLH VPETQSTQWM IGAAEIASMK SGSVLINASR
GTVVEIEPLA EALRQKKLLG AAIDVFPVEP RSNKDMFESP LRGLDNVILT PHVGGSTMEA
QANIGIEVAE KLVKYSDNGT STSSVNFPEV ALPAHPGKHR LLHIHRNVPG VLSEINRVFS
DNHINIASQY LQTNEAIGYV VIDIDAAHSD MALAKLANVP GTIRSRVLF
|
|---|
| |