Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1816 |
Symbol | |
ID | 4689447 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 1931896 |
End bp | 1934019 |
Gene Length | 2124 bp |
Protein Length | 707 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639834822 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_982047 |
Protein GI | 121604718 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.633094 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACCC TTGATCTGTT TGCGTCGCCA ACACCCGCGC CTATGCCGCC TGCCTCCGTG ATTGAGCGCA TTGCCGCCCT GCGTGCCGAG CTGGACCTGC ATGCCCATCG CTATTACGTG CTCGACGAGC CCAGCATTCC CGACGCCGAA TACGACCGGC TGTTCAAGGA GTTGCAGGCG CTCGAAGCGG CGCATCCCGA ACTGCTCACG CCCGACTCGC CCACGCAGCG CGTCGGCGGC AAGCCGCTGG GCCAGTTCGC CAGCGTGCGC CACCGCATTC CGATGCTCAG CATCCGCACC GAAACCGACA CCGAAGCCAC GGGCGCCCGG AATTTCGACA CCCGCGTGCG CAAGGAACTG GGGCTGAAGG AGTCCGATCC GCCGGTCGAG TACGTGGCCG AACTCAAGTT TGACGGCCTG GCGATGAGCC TGCGCTACGA AAACGGCGTG CTGGTGCAGG CCGCCACGCG TGGCGACGGC GAGGTCGGCG AAGATGTGAC GCAGAACATC CGCACCATCC GGCAGATTCC GCTTCGCTTG CCTGCCGATG CACCTCCAGT GATGGAAGTG CGCGGCGAGG TGTACATGCG CCGCGACGAA TTCGAGGCGC TCAACGAGCG CCAGCGCGAA AAGATCGCCA AGGGCGCGAA GGGCGAAAAG ACCTTCGTCA ACCCGCGCAA CGCGGCGGCC GGCGGCGTGC GCCAGCTCGA TCCGGCGTTT GCCGCCGAGC GCCGGCTGAG CTTTTTTGCC TACGGCGTGG GCGAGATCAC GCCACCCGAA GAAGGCGGGC CGGTGTTTGA AACCCATTTT GAACTGCTGC AAACCCTGAA ATCATGGTGT TTTCCGGTCG CTGCGCAGAC TCGGCTTGCA TATGGTGCTC CTGAATTGAT AGCGTTTCAT GAGGCCATCG GCCGGCAGCG CGACCAACTG CCTTACGACA TCGACGGCGT GGTGTACAAG GTCAACAGCC TGGCGCTGCA GCGCAAGATG GGCTTTGTCA GCCGCGAGCC GCGCTGGGCG GTGGCGCACA AATACCCGGC GCAGGAGCAG CTGACCACCG TGCTGGCCAT CGACATCCAG GTCGGGCGCA CCGGCAAGCT GACGCCGGTG GCAAAACTGG CGCCGGTGTT CGTCGGCGGC GTGACCGTGA CCAATGCCAC GCTGCACAAC GAGGACGAAG CGCGGCGCAA GGATGTGCGC GTGGGCGACA CGGTCATCGT GCGCCGCGCC GGCGACGTGA TTCCCGAAGT GGTCAGCGTG CTGCTGGACA AGCGCGTGCA GGATGCGCCG CAGTTCAGCA TGCCGCGCCA GTGCCCGGTG TGCGGCTCGG ACGCCGTCCG GGAAGAGGGC GAGGCCGACT ACCGCTGCAC CGGCGGGCTG TTCTGCGCCG CCCAGCGCAA GGAGGCCATC CTGCATTACG CCCACAAGCG TGCCGTCGAG ATCGAGGGCC TGGGCGACAA GCTGGTCGAG CAGTTGGTCG ATACCGGCGT CATCCGCACG CTGCCCGACC TGTACCGGCT GGGCTTTACC TCGCTGGCCA GCCTGGACCG CATGGCCGAG AAATCGGCCA GCAACCTAGT GGCGGCGCTG GAAAAGTCCA AGCAAACCAC CTTGCCACGT TTTGTCTTCG GGCTGGGCAT CCGGCATGTC GGCGAAGCGA CCGCCAAGGC GCTGGCCCGG CATTTCGGCC AGCTCGACAG CATCATGGAC GCCAGCGAGG AGCAATTGCT CGAAGTCGCC GATGTCGGCC CCATCGTTGC CAAGAGCATT CGCACCTTCT TCGAGCAGCC GCACAACCGG GAAGTCGTGG AGCAGCTGCG CGCCTGCGGC GTGACCTGGG AAGAGGGTGC GCCTGCCGCC GTGGCGCCCA AGCCGCTGTC AGGCAAGACC TTCGTGATCA CCGGAACCCT GCCCGGCCTG AGCCGCGACG ACGCCAAGGA CCGGATCGAA GCCGCGGGCG GCAAGGTGGC CGGCTCGGTC AGCAAGAAGA CTGATTACGT CGTGGCCGGT CTTGATGCCG GCAGCAAGCT GGTGAAGGCC GAGGCGCTGG GCGTGGCCGT CATTGATGAG GCGACCTTGC TGGCGCTGCT GGATTCGCCG CCGGACGAAC GCATTCCCGC TTAA
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Protein sequence | MSTLDLFASP TPAPMPPASV IERIAALRAE LDLHAHRYYV LDEPSIPDAE YDRLFKELQA LEAAHPELLT PDSPTQRVGG KPLGQFASVR HRIPMLSIRT ETDTEATGAR NFDTRVRKEL GLKESDPPVE YVAELKFDGL AMSLRYENGV LVQAATRGDG EVGEDVTQNI RTIRQIPLRL PADAPPVMEV RGEVYMRRDE FEALNERQRE KIAKGAKGEK TFVNPRNAAA GGVRQLDPAF AAERRLSFFA YGVGEITPPE EGGPVFETHF ELLQTLKSWC FPVAAQTRLA YGAPELIAFH EAIGRQRDQL PYDIDGVVYK VNSLALQRKM GFVSREPRWA VAHKYPAQEQ LTTVLAIDIQ VGRTGKLTPV AKLAPVFVGG VTVTNATLHN EDEARRKDVR VGDTVIVRRA GDVIPEVVSV LLDKRVQDAP QFSMPRQCPV CGSDAVREEG EADYRCTGGL FCAAQRKEAI LHYAHKRAVE IEGLGDKLVE QLVDTGVIRT LPDLYRLGFT SLASLDRMAE KSASNLVAAL EKSKQTTLPR FVFGLGIRHV GEATAKALAR HFGQLDSIMD ASEEQLLEVA DVGPIVAKSI RTFFEQPHNR EVVEQLRACG VTWEEGAPAA VAPKPLSGKT FVITGTLPGL SRDDAKDRIE AAGGKVAGSV SKKTDYVVAG LDAGSKLVKA EALGVAVIDE ATLLALLDSP PDERIPA
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