| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1810 |
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| Symbol | |
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| ID | 4687659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 1922304 |
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| End bp | 1923524 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639834816 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_982041 |
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| Protein GI | 121604712 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.834903 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCGAA CACTCCACCT AGCCGAGCAG CTGATTTCCC GCCCGTCCGT CACACCCGAC
GATGCCGGCT GCCAGGCCCT GCTGATTGCG CGGCTGGCGC CGCTGGGTTT CAAGTGCGAA
ACCATCGTCA GCGGACCCGA GCATTTCCGG GTCACGAATT TATGGGCAAA ATTTGAAGGT
TTTAGCCCTT CTGCGCAAGC AGCGCTTGCA CAACCAGCTA TTGAATCCAT AGCAAACACT
GAATTGTCAC AAGCCAAAGT CAAGACGCTG GTGTTTGCCG GCCACACCGA TGTGGTGCCG
ACCGGCCCGC TGGCGCAGTG GCACAGCCAC CCGTTCACGC CCAGCCACCG CGCGGGCAAG
CTGTACGGGC GCGGCACGGC GGATATGAAA ACCTCGATTG CCGCCATGGT CGTGGCGGTC
GAGGAGTTCC TGGCGGCGCA TCCCCGGCCC GCGCTGTCGA TGGCCTTTTT GATCACCAGC
GACGAGGAAG GCCCCGGCAT CGACGGCACG GTGGTGGTCT GCGACCGGCT TTTGGCGCGC
GGCGAGGTGC TCGACTACTG CATCGTCGGC GAACCCACGT CGGTCAAACA GCTGGGCGAC
ATGATCAAGA ACGGCCGACG CGGCACGCTG AGCGGCAAGC TCAGCGTCAA GGGCGTGCAG
GGCCATATCG CCTACCCGCA CCTGGCCAAG AACCCGATTC ACCTGTTCGC GCCCGCGCTG
GCTGAACTGG TGGCGACGCA GTGGGACCAG GGCAATGATT TTTTCCCGGC GACCAGCTGG
CAGGTTTCCA ACATCCATGC CGGCACCGGC GCCAGCAACG TCATTCCCGG CGACCTGGTG
GTCGATTTCA ATTTCCGCTT CTGCACCGAA TCGACTCCCG AAAGCCTGCA GCAGCGCCTG
CTGGCCATTT TGAGCAAGCA CCAGTTCGAA TACGAGCTGA AATGGACGCT TGGCGGCCTG
CCCTTTTTGA CCACGCCCGG CACGCTGGTC GATGCGGTGC GCGGCGCGAT TTTGGCCGAG
ACCGGCGTGC AGACCGAGCT GTCCACGACC GGCGGCACCA GCGACGGCCG CTTCATCGCC
AAGATCTGCC CGCAGGTCAT CGAGCTGGGT CCGGTCAACG CGACGATCCA CCAGATCAAC
GAATGCGTGG ACACCGCATC GCTCGACCCG CTCAAGAACA TCTACAAGGG CGTTCTCGAG
CGCCTGGCAG GACTGGCATG A
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| Protein sequence | MSRTLHLAEQ LISRPSVTPD DAGCQALLIA RLAPLGFKCE TIVSGPEHFR VTNLWAKFEG
FSPSAQAALA QPAIESIANT ELSQAKVKTL VFAGHTDVVP TGPLAQWHSH PFTPSHRAGK
LYGRGTADMK TSIAAMVVAV EEFLAAHPRP ALSMAFLITS DEEGPGIDGT VVVCDRLLAR
GEVLDYCIVG EPTSVKQLGD MIKNGRRGTL SGKLSVKGVQ GHIAYPHLAK NPIHLFAPAL
AELVATQWDQ GNDFFPATSW QVSNIHAGTG ASNVIPGDLV VDFNFRFCTE STPESLQQRL
LAILSKHQFE YELKWTLGGL PFLTTPGTLV DAVRGAILAE TGVQTELSTT GGTSDGRFIA
KICPQVIELG PVNATIHQIN ECVDTASLDP LKNIYKGVLE RLAGLA
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