| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1780 |
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| Symbol | |
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| ID | 4686813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 1890741 |
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| End bp | 1893311 |
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| Gene Length | 2571 bp |
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| Protein Length | 856 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639834786 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_982011 |
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| Protein GI | 121604682 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00464627 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00534062 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCCAGT TCCCAATTTC CCCCACTGCT GACGCTGCGG CCAGCCCTGC GTCCATGGCT
TTGTGGCGAC GCTGGTGGCG CCGGCAATCA CCTTCCCGGC AAGACCGTTT TATCGCGCTC
GGCCCGCTGT TTTCGGTCAT CCTTTTTCTG GCGGCCGTCA TTGCCGCTTT CGGCTACCTG
CGCATCGAAG AGATAGACCG CGAACAGCAG GCGGTCACGC GTGACGTGGA ATACGCCCAG
CAACGCCTGA GGCTGCGCCT GCTGGAGCGG CAGGAGCAGT TGATGCGGAT TGGCCGGGAT
GTGTCCAACA GCCAGATCGA CACCGAAGAG TTCATCGTCC AGGCCGAAGC ACTGGTGAAC
CAGAACCCGG AACTGATGGC CATCAGCTGG ATTGACAGCA AGCGGCGCAT CAAGGCGTCT
TATGTTTCGT CCAGCGCCAA TGCCATCGGG CCGCGCACGG TCGGCGAGCA GCTCACGGTG
GGTGAAACGG ATGGCACGTA CGAGCTGGCA CGCGACCTGC GGCAGCCGGT TTACTCCCGG
CCGCTGATCG CGCAGGACAC GCGCCGCTAC AACGCAGCCA GCCTGCAGCT GCAGGTGCCG
CTCGATGACC AGGGAAAGTT TGCCGGCGTC ATCATGGGCG AATATTCGGT GGACGGCCTG
CTGCGCTTTG GCATTCCGAC TGAAATCACG GCCAAGTATG CCGTCGCGCT GGTCGATGAC
AAAGAGGTGG TGCTGGCCGG CAACCTGCCG CCGCCCCGCA AGGGCGCCGC GAAGTTGCTG
CCCTGGGCAG AAGGCGCAGC CAAATACGAA ATTCCGGTAT CTCCCGTGGG CAATGGCCTC
TTGATACGCG CCGAGGGCTA CCGCGCCTCG CAGGGCTTGG TGGGCAGCGG CTTTTTCTGG
CTGGTCAGCG CGCTCAGCGC GCTGACCGTG TGGATGCTGC TGGGCAACTG GCGCCATACC
CGCCGCCGGG TCCAGGCCCA GGAGGCGCTG CTGACCGAAA CCCACTTTCG CCGCGCCATG
GAGAACTCCA TGCTGACCGG CATGCGCGCG CTGGACCTGC AGGGCCGCAT CACCTATGTC
AACCCGGCTT TTTGCCAGAT GACCGGCCTG ACCGAAGCCG AACTGGTCGG CTGCACGGCG
CCTTTTCCGC ACTGGCCGGA ATCAGAGCTG GACATCATGC AGGCGCGGCT GAATGACGAA
CTCCGGGGCC GGACACCGCC CGGTGGTTTC GAGATTCGGG TCAAGCGCAA GAACGGCAAT
ATTTTTGATG CCCGCATGTA TGTGTCGCCG CTGATTGATC CGCACGGCCA TCAAACCGGC
TGGATGACGT CGATGACCGA CATCACCGAA CCCAAGCGCA TCCGCGAAGA ACTCACCGCC
TCTTACGAGC GCTTCACCAC CGTGCTTGAA GGGCTGGACG CCGCCGTGTC CGTGGCGCCG
CTGGGCAGTG AAGAGCTGCT GTTTGCCAAC AAGCTGTACC GCTCCTGGTT TGGCGGCCAG
GTCTCTGGCC ATGTGAACCT GATTGCCCAG GCCGGTGTTC CCGCCTTTGC ACCGACCGGC
GATGCACTGG ATGCGGTGGA TGACATGGCC GGTTTTCCGA CCGATTCACT GACCGGCGCG
CAGACGGCGA ATGCCGAAAT CTTCGTGCCC GAACTGGCCA AATGGCTGGA AGTGCGTTCG
CGCTACCTGA ACTGGGTCGA TGGCCGCCTG GCGCAGATGG TGATTGCCAC CGACATCACG
CCGCGCCGCC ATGCCGAGGA ACAGGCCGCC CAGCAAAACG AACGCGCCCA GAACGCCAGC
CGCCTGATCA CCATGGGCGA AATGGCGTCC AGCGTGGCGC ACGAGTTGAA CCAGCCGCTG
ACGGCCATCA ACAACTATTG CAACGGCATG GTGTCGCGCA TCAAGGCCAA CCAGATCAGC
AATGACGACC TGCTGGTGGC GCTGGAAAAA ACCGCCAAGC AGGCCTGGCG CGCCGGGCAG
ATCATCCAGC GCATCCGCGC CTTTGTGAAA CGCAGCGAGC CCAACCGCAC CTCGGCCGAT
GTGGCGACCC TCGTCAGCAA CGCCATGGAA CTGGCCGAGA TTGAACTCAG GCGCCATCAT
GTGCGCCTGA CCCACTACAT CGCCGCCCGC CTTCCCGACC TGATGGTGGA CCGGATCCTG
ATCGAGCAGG TGTTGATCAA CCTGATGAAA AATGCGGCCG AGTCGATTGC CCAGTCGCAT
CGGCCAACGG CCCAGCGCCA TGTTGAACTG CAGGTGGTGC CCAAGCAGAT TGATGGGCAA
GGCGTGGTGG AGTTCTCGGT ACTCGACTCG GGTCGGGGCC TGTCGCCTGA AGTGATGGAA
CGCCTGTTCG AAGCCTTCTA TTCGACCAAG GCCGAGGGCA TGGGCATTGG CCTGAAACTG
TGCCGCAGCA TCGTCGAATC TCACCATGGC AGGCTGGAGG CGGTGAACCT CTACAATGGC
GACGAAGTGG CCGGGTGCCG GTTTACCTTC TGGATTCCGG TAACTCCCCT GATTTCACCG
GCAGTGTCTG CTACCAATAC CATAGCCGCC GAAGCTGCGG GGCCGCAGTG A
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| Protein sequence | MPQFPISPTA DAAASPASMA LWRRWWRRQS PSRQDRFIAL GPLFSVILFL AAVIAAFGYL
RIEEIDREQQ AVTRDVEYAQ QRLRLRLLER QEQLMRIGRD VSNSQIDTEE FIVQAEALVN
QNPELMAISW IDSKRRIKAS YVSSSANAIG PRTVGEQLTV GETDGTYELA RDLRQPVYSR
PLIAQDTRRY NAASLQLQVP LDDQGKFAGV IMGEYSVDGL LRFGIPTEIT AKYAVALVDD
KEVVLAGNLP PPRKGAAKLL PWAEGAAKYE IPVSPVGNGL LIRAEGYRAS QGLVGSGFFW
LVSALSALTV WMLLGNWRHT RRRVQAQEAL LTETHFRRAM ENSMLTGMRA LDLQGRITYV
NPAFCQMTGL TEAELVGCTA PFPHWPESEL DIMQARLNDE LRGRTPPGGF EIRVKRKNGN
IFDARMYVSP LIDPHGHQTG WMTSMTDITE PKRIREELTA SYERFTTVLE GLDAAVSVAP
LGSEELLFAN KLYRSWFGGQ VSGHVNLIAQ AGVPAFAPTG DALDAVDDMA GFPTDSLTGA
QTANAEIFVP ELAKWLEVRS RYLNWVDGRL AQMVIATDIT PRRHAEEQAA QQNERAQNAS
RLITMGEMAS SVAHELNQPL TAINNYCNGM VSRIKANQIS NDDLLVALEK TAKQAWRAGQ
IIQRIRAFVK RSEPNRTSAD VATLVSNAME LAEIELRRHH VRLTHYIAAR LPDLMVDRIL
IEQVLINLMK NAAESIAQSH RPTAQRHVEL QVVPKQIDGQ GVVEFSVLDS GRGLSPEVME
RLFEAFYSTK AEGMGIGLKL CRSIVESHHG RLEAVNLYNG DEVAGCRFTF WIPVTPLISP
AVSATNTIAA EAAGPQ
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