Gene Pnap_1729 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1729 
Symbol 
ID4686378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp1833128 
End bp1834420 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content63% 
IMG OID639834733 
Productphosphoribosylamine--glycine ligase 
Protein accessionYP_981963 
Protein GI121604634 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0151] Phosphoribosylamine-glycine ligase 
TIGRFAM ID[TIGR00877] phosphoribosylamine--glycine ligase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.576125 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTTT TAGTCGTCGG CGGCGGTGGC CGTGAGCATG CACTGGCCTG GAAACTGTCC 
CAGTCGCCCA AGGTACAGGC GGTTTATGTC GCGCCGGGCA ATGGCGGAAC GGCGCTCGAT
GCCCGGCTTG AGAACATAAA TATCACGGAT GTACAGGCGC TGCGTGCATG GGCCGCTACT
GAAAAGATAG CGCTGACGGT CGTTGGCCCC GAGCAGCCGC TGGCCGCTGG CATTGTCGAT
GAGTTCCGCA AGCATGGCCT GCGGGTGTTT GGCCCGACCA AGGCGGCCGC GCAACTGGAA
AGCTCCAAGG CCTTTTCCAA GGCCTTCATG AAGCGTCACC ATATTCCGAC GGCGGAGTAT
GAGACCTTCA CCGATGCGGC GGCGGCGCAT GCATATATCG ATGAAAAGGG CGCGCCGATT
GTCGTTAAGG CCGATGGCCT GGCGGCTGGC AAGGGCGTGG TGGTGGCGAT GACGCTGCAC
GAGGCGCATG AAGCCATCGA GTTCATGCTG GCGCCCGACC CGGAATTCAA CCCGCTGGGC
GTGACGCACA ACGAAGGCGG CGCGCGCGTC GTCATCGAGG AATTCCTGCA AGGCGAGGAA
GCCAGTTTCA TCGTCATGTG CGACGGCAAG AACGTGGCCG CCATGGCCAC CAGCCAGGAC
CACAAGCGCC TGCTCGACGG CGACCTGGGT CCGAACACCG GCGGCATGGG CGCGTATTCG
CCGGCCCCGG TGGTCACGCC CGATGTGCAT GCCCGGGCGA TGCGCGAAAT CATCCTGCCG
ACCATCAAGG GCATGGAAAA GGACGGCATT CCATTTACCG GATTTTTGTA CGCCGGCCTG
ATGATTGATG CCCACGGCAA GCCCAAGACG CTGGAGTTCA ACTGCCGCAT GGGTGACCCG
GAAACCCAGC CCATCATGAT GCGGCTGAAA ACCGATCTGT TCGATGTGAT GATGGCCGCC
ACCTCGGGCG CCCTCGACAA GATCGAGTTG GAATGGGACC GCCGTCCGGC CTTGGGCGTG
GTCATGGCCG CGCACGGTTA TCCGCTGCAT CCGCGCAAGG GCGATGCGAT CCACGGCCTT
CCGCTGGCAA CCGAAGATGC CATGGTGTTT CACGCTGGAA CGCAACGGCA GGATGGCTCC
ATCGTCACTT CCGGCGGCCG CGTGCTGTGC GTGACCGCAC TTGGCGGCAC CGTCAAAGCC
GCGCAGCAGC GCGCCTATGA AGTCGCCCGA AGTATTGAAT TTGACGGCGC GCAGTACCGC
AAGGACATTG GCTACCGGGC CATCAAGTCC TGA
 
Protein sequence
MKVLVVGGGG REHALAWKLS QSPKVQAVYV APGNGGTALD ARLENINITD VQALRAWAAT 
EKIALTVVGP EQPLAAGIVD EFRKHGLRVF GPTKAAAQLE SSKAFSKAFM KRHHIPTAEY
ETFTDAAAAH AYIDEKGAPI VVKADGLAAG KGVVVAMTLH EAHEAIEFML APDPEFNPLG
VTHNEGGARV VIEEFLQGEE ASFIVMCDGK NVAAMATSQD HKRLLDGDLG PNTGGMGAYS
PAPVVTPDVH ARAMREIILP TIKGMEKDGI PFTGFLYAGL MIDAHGKPKT LEFNCRMGDP
ETQPIMMRLK TDLFDVMMAA TSGALDKIEL EWDRRPALGV VMAAHGYPLH PRKGDAIHGL
PLATEDAMVF HAGTQRQDGS IVTSGGRVLC VTALGGTVKA AQQRAYEVAR SIEFDGAQYR
KDIGYRAIKS