Gene Pnap_1721 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1721 
Symbol 
ID4686752 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp1824667 
End bp1826205 
Gene Length1539 bp 
Protein Length512 aa 
Translation table11 
GC content56% 
IMG OID639834725 
Product2-isopropylmalate synthase 
Protein accessionYP_981955 
Protein GI121604626 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID[TIGR00973] 2-isopropylmalate synthase, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0714728 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGACA AACTCATTAT TTTCGACACC ACCTTGCGCG ACGGCGAGCA GTCACCCGGT 
GCCTCCATGA CCCGTGATGA AAAACTGCGT ATTGCCCGAC AACTGGAACG GCTGAAGGTT
GATGTGATCG AAGCCGGCTT TGCAGCCAGC TCGAATGGAG ACTTTGAATG TGTCAAGGCG
ATTGCAGAGG TTGTGAAGGA TTCCACCATC TGTTCACTGG CGCGCGCCAA CGACCGCGAT
ATTTCACGGG CGGCTGAAGC CCTGAAACCG GCCAACTCGG GTCGTCTGCA TCTTTTTCTG
GCAACCAGCG CACTGCATAT GGAAAAAAAG CTCCGTATGA CGCCCGATCA GGTATTTGAG
CAAGCGCGGC TTTCGGTGCG CTTTGCGCGC AACCTGATGG CTGACATCGA GTTCAGCCCC
GAGGACGGTT ATCGCTCTGA CCCGGACTTT TTGTGCCGGG TCATTGAGGC TGTCATCAAC
GAAGGAGCCA CCACGATCAA TGTTCCCGAC ACCGTGGGCT ATGCAATTCC CGAACTCTAC
GGCAACTTCA TCAGGAACCT GCGTGAGCGT ATTCCCAACA GTGACAAGGC TGTCTGGTCG
GTTCATTGCC ATAACGATTT GGGCATGGCC GTTGCCAATT CTTTGGCAGG GGTGAAGATT
GGCGGCGCCC GGCAGGTTGA ATGCACCATC AACGGCCTGG GCGAACGCGC GGGCAACTGC
TCGCTTGAAG AAGTGGTAAT GGCCGTGAAA ACGCGCAAGG ATTACTTCGG GCTGGATATT
GGCATCGACA CGCAGCAAAT ACTGGCTGCC AGTCGCCTGG TGAGCCAGAC GACGGGTTTT
GTGGTGCAGC CCAACAAGGC TGTGGTGGGA GCCAACGCTT TTGCCCACGC TTCCGGCATT
CATCAGGATG GCGTCTTGAA GGCCCGTGAT ACCTACGAGA TCATGCGGGC TGAAGATGTG
GGCTGGTCAG CCAACAAAAT CGTGCTGGGC AAGCTGAGCG GCCGCAATGC CTTCAAGCAG
CGGCTGCAGG AACTGGGCGT GGCGATGGAA AGTGAAACCG ACATCAACAA TGCCTTCATC
AAGTTCAAAG ACCTTGCGGA CCGCAAAAGC GAAATTTTTG ACGAGGACAT TCTTGCCTTG
GTCAGCGATG AGAGCGTCAC CCACAGCAAC GAGCAATATG GTTTTGTGTC CTTGTCGCAG
CACAGTGAAA CCGGTGAGCG TCCCCAAGCA TGCGTGATTT TCACGGTGGC GGGCAAGGAG
GTCAAGGGCG AGTCAGACGG CAATGGCCCG GTGGATGCAT CGCTCAAGGC GATTGAAACC
CACGTCAAGA GCGGTGCCGA GATGGTGCTT TATTCAGTCA ATGCCATCAG CGGTTCGACC
GAAAGCCAGG GCGAAGTGAC GGTGCGCCTG CAAAACAGTG GGCGCGTGGT CAATGGCGTC
GGGTCTGATC CTGATATCGT AGTGGCTTCG GCCAAGGCTT ACCTGAGCGC CCTGAATAAG
CTGCAAAGTA AAGCCGACCG GGTTGCCGCG CAAGGGTAA
 
Protein sequence
MTDKLIIFDT TLRDGEQSPG ASMTRDEKLR IARQLERLKV DVIEAGFAAS SNGDFECVKA 
IAEVVKDSTI CSLARANDRD ISRAAEALKP ANSGRLHLFL ATSALHMEKK LRMTPDQVFE
QARLSVRFAR NLMADIEFSP EDGYRSDPDF LCRVIEAVIN EGATTINVPD TVGYAIPELY
GNFIRNLRER IPNSDKAVWS VHCHNDLGMA VANSLAGVKI GGARQVECTI NGLGERAGNC
SLEEVVMAVK TRKDYFGLDI GIDTQQILAA SRLVSQTTGF VVQPNKAVVG ANAFAHASGI
HQDGVLKARD TYEIMRAEDV GWSANKIVLG KLSGRNAFKQ RLQELGVAME SETDINNAFI
KFKDLADRKS EIFDEDILAL VSDESVTHSN EQYGFVSLSQ HSETGERPQA CVIFTVAGKE
VKGESDGNGP VDASLKAIET HVKSGAEMVL YSVNAISGST ESQGEVTVRL QNSGRVVNGV
GSDPDIVVAS AKAYLSALNK LQSKADRVAA QG