Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1721 |
Symbol | |
ID | 4686752 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 1824667 |
End bp | 1826205 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639834725 |
Product | 2-isopropylmalate synthase |
Protein accession | YP_981955 |
Protein GI | 121604626 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0714728 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGACA AACTCATTAT TTTCGACACC ACCTTGCGCG ACGGCGAGCA GTCACCCGGT GCCTCCATGA CCCGTGATGA AAAACTGCGT ATTGCCCGAC AACTGGAACG GCTGAAGGTT GATGTGATCG AAGCCGGCTT TGCAGCCAGC TCGAATGGAG ACTTTGAATG TGTCAAGGCG ATTGCAGAGG TTGTGAAGGA TTCCACCATC TGTTCACTGG CGCGCGCCAA CGACCGCGAT ATTTCACGGG CGGCTGAAGC CCTGAAACCG GCCAACTCGG GTCGTCTGCA TCTTTTTCTG GCAACCAGCG CACTGCATAT GGAAAAAAAG CTCCGTATGA CGCCCGATCA GGTATTTGAG CAAGCGCGGC TTTCGGTGCG CTTTGCGCGC AACCTGATGG CTGACATCGA GTTCAGCCCC GAGGACGGTT ATCGCTCTGA CCCGGACTTT TTGTGCCGGG TCATTGAGGC TGTCATCAAC GAAGGAGCCA CCACGATCAA TGTTCCCGAC ACCGTGGGCT ATGCAATTCC CGAACTCTAC GGCAACTTCA TCAGGAACCT GCGTGAGCGT ATTCCCAACA GTGACAAGGC TGTCTGGTCG GTTCATTGCC ATAACGATTT GGGCATGGCC GTTGCCAATT CTTTGGCAGG GGTGAAGATT GGCGGCGCCC GGCAGGTTGA ATGCACCATC AACGGCCTGG GCGAACGCGC GGGCAACTGC TCGCTTGAAG AAGTGGTAAT GGCCGTGAAA ACGCGCAAGG ATTACTTCGG GCTGGATATT GGCATCGACA CGCAGCAAAT ACTGGCTGCC AGTCGCCTGG TGAGCCAGAC GACGGGTTTT GTGGTGCAGC CCAACAAGGC TGTGGTGGGA GCCAACGCTT TTGCCCACGC TTCCGGCATT CATCAGGATG GCGTCTTGAA GGCCCGTGAT ACCTACGAGA TCATGCGGGC TGAAGATGTG GGCTGGTCAG CCAACAAAAT CGTGCTGGGC AAGCTGAGCG GCCGCAATGC CTTCAAGCAG CGGCTGCAGG AACTGGGCGT GGCGATGGAA AGTGAAACCG ACATCAACAA TGCCTTCATC AAGTTCAAAG ACCTTGCGGA CCGCAAAAGC GAAATTTTTG ACGAGGACAT TCTTGCCTTG GTCAGCGATG AGAGCGTCAC CCACAGCAAC GAGCAATATG GTTTTGTGTC CTTGTCGCAG CACAGTGAAA CCGGTGAGCG TCCCCAAGCA TGCGTGATTT TCACGGTGGC GGGCAAGGAG GTCAAGGGCG AGTCAGACGG CAATGGCCCG GTGGATGCAT CGCTCAAGGC GATTGAAACC CACGTCAAGA GCGGTGCCGA GATGGTGCTT TATTCAGTCA ATGCCATCAG CGGTTCGACC GAAAGCCAGG GCGAAGTGAC GGTGCGCCTG CAAAACAGTG GGCGCGTGGT CAATGGCGTC GGGTCTGATC CTGATATCGT AGTGGCTTCG GCCAAGGCTT ACCTGAGCGC CCTGAATAAG CTGCAAAGTA AAGCCGACCG GGTTGCCGCG CAAGGGTAA
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Protein sequence | MTDKLIIFDT TLRDGEQSPG ASMTRDEKLR IARQLERLKV DVIEAGFAAS SNGDFECVKA IAEVVKDSTI CSLARANDRD ISRAAEALKP ANSGRLHLFL ATSALHMEKK LRMTPDQVFE QARLSVRFAR NLMADIEFSP EDGYRSDPDF LCRVIEAVIN EGATTINVPD TVGYAIPELY GNFIRNLRER IPNSDKAVWS VHCHNDLGMA VANSLAGVKI GGARQVECTI NGLGERAGNC SLEEVVMAVK TRKDYFGLDI GIDTQQILAA SRLVSQTTGF VVQPNKAVVG ANAFAHASGI HQDGVLKARD TYEIMRAEDV GWSANKIVLG KLSGRNAFKQ RLQELGVAME SETDINNAFI KFKDLADRKS EIFDEDILAL VSDESVTHSN EQYGFVSLSQ HSETGERPQA CVIFTVAGKE VKGESDGNGP VDASLKAIET HVKSGAEMVL YSVNAISGST ESQGEVTVRL QNSGRVVNGV GSDPDIVVAS AKAYLSALNK LQSKADRVAA QG
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