| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1716 |
|---|
| Symbol | |
|---|
| ID | 4686954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 1818990 |
|---|
| End bp | 1819556 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639834720 |
|---|
| Product | RNA polymerase factor sigma-70 |
|---|
| Protein accession | YP_981950 |
|---|
| Protein GI | 121604621 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.172385 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCAACTG AACAAGAACT TTCCGACTTC CTGAAAAGCG TTGAAAAACG GGCCTTCAAA
CGCAGCATTT ACCACGTCCG GGACGAAGAA GCCGCGCTTG ACATTGTCCA GGACAGCATG
ATGAAACTGG CGCAGCACTA CGGTGACAAA CCGGCTGCGG AGTTGCCCAT GCTGTTCCAG
CGAATTTTGT CCAACACCAC ACTCGATTGG TTTCGGCGCC GCAAGACCCG CAACGCCCTT
TTTTCCAACA TGAGCGAGTT TTCTGCCTCC GGAGAAGATG GCAATTTTGA TCTTCTGGAA
ACTTTGGAGA GTCTGAGCAA CTCTGAAGGC ACGGAAAGCG CCCAGGACGC CACCGAACGG
GCTCAAATAT TGCATGAAAT TGAACTTGAG ATAAAGGAGT TGCCGGACCG TCAACGGGAA
GCCTTTCTGA TGCGTTACTG GGAGGAAATG GATGTGGCTG AAACGGCCAC AGCCATGGGT
TGCTCGGAAG GCAGCGTCAA AACACACTGT TCCCGTGCAG TTCACGCCCT CAGTAAAGCG
CTGAGCGCCA AAGGGATCAA ACTATGA
|
|---|
| Protein sequence | MATEQELSDF LKSVEKRAFK RSIYHVRDEE AALDIVQDSM MKLAQHYGDK PAAELPMLFQ
RILSNTTLDW FRRRKTRNAL FSNMSEFSAS GEDGNFDLLE TLESLSNSEG TESAQDATER
AQILHEIELE IKELPDRQRE AFLMRYWEEM DVAETATAMG CSEGSVKTHC SRAVHALSKA
LSAKGIKL
|
|---|
| |