Gene Pnap_1681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1681 
Symbol 
ID4689412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp1777086 
End bp1778390 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content65% 
IMG OID639834685 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_981915 
Protein GI121604586 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0776882 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATCAA AAGCAATTTA TACCGTGGTC GCCGTGGCGG GCATTGCAGC GGCTTCAGGC 
GCTGCCTGGT GGTATCAGAA ACCCAGGCCC GCTGATGGCG CCGCAAACAC GGCCAGCGCT
GGTGCGCCCG CCAAACCGCC TTCGGTGGAA GTCGCACGGG TGGAACAGGC GCGGCTTTCC
GACGAAACCC GGACCGTCGG CAGCCTGCGT TCGCGCCGGG GCGTGGTGCT GCGTCCTGAA
GTCAGCGGGC GCATCACCCA GCTCAACTTC ACCGATGGCC AGCGGGTTCG CAAGGGACAG
CTGCTGGTGC AACTCGATGA CCAGCTGCCG CAGGCGCAAA TCCAGCAAAG CCAGGCCGAA
CTGTCGATAG CCCAGGCCAA CCAGAAACGC AACCAGGAAC TGGTGGCGCA AAACTTCATC
AGCCAGCGCT CGCTCGATGA AAGCGCCGCC AGCCTGCAGG TGGCGCAGGC CAAGCTGGCA
TTGGCCAAAG CCACGGCGGC ACGCCTGAGA ATCGTTGCGC CGTTTGACGG CATCGCCGGC
ATTCGCCAGG TCAATGTGGG CGACTACCTC AAGGATGGCG CCGACATTGT CAACATTGAA
GACATCGACG CCATTTACGT GGATTTCCGG CTGCCCGAGC GCTACCAGAG CAAGGTCAGG
CGCGGGCAGG TGGCCCTGCT TGACATTGAC GCGCTGCCCG GCCAGCGCTA CACGGCGCAG
ATCCAGGCGA TTGACCCGTT GATTGATGTG AACGGCCGGT CGGTCGGCAT TCGCGGCTGC
ATCGACAACC GCGCCCTGAC ATTGCGGCCC GGCATGTTCG CGCGCGTGAA TACCGTTTTT
GGCGTTCGCG ACAACGCCAG CGTCATTCCC GAAGAAGCGA TTGTTCCGCA AGGCGGCAGG
CAGTTTGTCA TCAAGCTGCT GGACGGGCCG AATGAAGCCA CCCGGACCAC CCGGCGTGTC
GAGGTCAAGG TGGGTTTGCG CAGCCCGGGC AAGGTGGAAA TCACCGAGGG GCTGGCGCCC
GGCGACACCG TGGTCAGGAC TGGCCAGCAG CGGATTCAGA AAGACGGCAC CGTCGTGACG
GTGGTGGAAC TGGCCAATGG CGCACCGTCC CGCCCGGCCG CTGAAACAAG CGGGGCCAGC
GCTTCAAATT CAGCTCCCGC CGCCGCAAAA ACCGCCGCGC CATCAGGCCC CAATCCGTGT
GGCGCCGTGA TTTCCCAGGC GCCAGCATCA GGCCTTGTGC CCACCAGCAG CACCGCCATG
CCGGAAAAAA TCCCTGCCAG CCCGGCAGCG CGCAATCCCG GCTGA
 
Protein sequence
MASKAIYTVV AVAGIAAASG AAWWYQKPRP ADGAANTASA GAPAKPPSVE VARVEQARLS 
DETRTVGSLR SRRGVVLRPE VSGRITQLNF TDGQRVRKGQ LLVQLDDQLP QAQIQQSQAE
LSIAQANQKR NQELVAQNFI SQRSLDESAA SLQVAQAKLA LAKATAARLR IVAPFDGIAG
IRQVNVGDYL KDGADIVNIE DIDAIYVDFR LPERYQSKVR RGQVALLDID ALPGQRYTAQ
IQAIDPLIDV NGRSVGIRGC IDNRALTLRP GMFARVNTVF GVRDNASVIP EEAIVPQGGR
QFVIKLLDGP NEATRTTRRV EVKVGLRSPG KVEITEGLAP GDTVVRTGQQ RIQKDGTVVT
VVELANGAPS RPAAETSGAS ASNSAPAAAK TAAPSGPNPC GAVISQAPAS GLVPTSSTAM
PEKIPASPAA RNPG