Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1681 |
Symbol | |
ID | 4689412 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 1777086 |
End bp | 1778390 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639834685 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_981915 |
Protein GI | 121604586 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0776882 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCATCAA AAGCAATTTA TACCGTGGTC GCCGTGGCGG GCATTGCAGC GGCTTCAGGC GCTGCCTGGT GGTATCAGAA ACCCAGGCCC GCTGATGGCG CCGCAAACAC GGCCAGCGCT GGTGCGCCCG CCAAACCGCC TTCGGTGGAA GTCGCACGGG TGGAACAGGC GCGGCTTTCC GACGAAACCC GGACCGTCGG CAGCCTGCGT TCGCGCCGGG GCGTGGTGCT GCGTCCTGAA GTCAGCGGGC GCATCACCCA GCTCAACTTC ACCGATGGCC AGCGGGTTCG CAAGGGACAG CTGCTGGTGC AACTCGATGA CCAGCTGCCG CAGGCGCAAA TCCAGCAAAG CCAGGCCGAA CTGTCGATAG CCCAGGCCAA CCAGAAACGC AACCAGGAAC TGGTGGCGCA AAACTTCATC AGCCAGCGCT CGCTCGATGA AAGCGCCGCC AGCCTGCAGG TGGCGCAGGC CAAGCTGGCA TTGGCCAAAG CCACGGCGGC ACGCCTGAGA ATCGTTGCGC CGTTTGACGG CATCGCCGGC ATTCGCCAGG TCAATGTGGG CGACTACCTC AAGGATGGCG CCGACATTGT CAACATTGAA GACATCGACG CCATTTACGT GGATTTCCGG CTGCCCGAGC GCTACCAGAG CAAGGTCAGG CGCGGGCAGG TGGCCCTGCT TGACATTGAC GCGCTGCCCG GCCAGCGCTA CACGGCGCAG ATCCAGGCGA TTGACCCGTT GATTGATGTG AACGGCCGGT CGGTCGGCAT TCGCGGCTGC ATCGACAACC GCGCCCTGAC ATTGCGGCCC GGCATGTTCG CGCGCGTGAA TACCGTTTTT GGCGTTCGCG ACAACGCCAG CGTCATTCCC GAAGAAGCGA TTGTTCCGCA AGGCGGCAGG CAGTTTGTCA TCAAGCTGCT GGACGGGCCG AATGAAGCCA CCCGGACCAC CCGGCGTGTC GAGGTCAAGG TGGGTTTGCG CAGCCCGGGC AAGGTGGAAA TCACCGAGGG GCTGGCGCCC GGCGACACCG TGGTCAGGAC TGGCCAGCAG CGGATTCAGA AAGACGGCAC CGTCGTGACG GTGGTGGAAC TGGCCAATGG CGCACCGTCC CGCCCGGCCG CTGAAACAAG CGGGGCCAGC GCTTCAAATT CAGCTCCCGC CGCCGCAAAA ACCGCCGCGC CATCAGGCCC CAATCCGTGT GGCGCCGTGA TTTCCCAGGC GCCAGCATCA GGCCTTGTGC CCACCAGCAG CACCGCCATG CCGGAAAAAA TCCCTGCCAG CCCGGCAGCG CGCAATCCCG GCTGA
|
Protein sequence | MASKAIYTVV AVAGIAAASG AAWWYQKPRP ADGAANTASA GAPAKPPSVE VARVEQARLS DETRTVGSLR SRRGVVLRPE VSGRITQLNF TDGQRVRKGQ LLVQLDDQLP QAQIQQSQAE LSIAQANQKR NQELVAQNFI SQRSLDESAA SLQVAQAKLA LAKATAARLR IVAPFDGIAG IRQVNVGDYL KDGADIVNIE DIDAIYVDFR LPERYQSKVR RGQVALLDID ALPGQRYTAQ IQAIDPLIDV NGRSVGIRGC IDNRALTLRP GMFARVNTVF GVRDNASVIP EEAIVPQGGR QFVIKLLDGP NEATRTTRRV EVKVGLRSPG KVEITEGLAP GDTVVRTGQQ RIQKDGTVVT VVELANGAPS RPAAETSGAS ASNSAPAAAK TAAPSGPNPC GAVISQAPAS GLVPTSSTAM PEKIPASPAA RNPG
|
| |