Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1650 |
Symbol | |
ID | 4689407 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 1744973 |
End bp | 1746154 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639834655 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_981885 |
Protein GI | 121604556 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.154413 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAAC GATTCGCTCT TAAATTAATA GCTGCCTGTG CAATAGCAGC AAGCGCAACA GCCGGTTTTG CGCAAGAAGT GATCAAGATC GCCAACATTG TCGAGCTGTC CGGCAGCGGC GCCAGCGCCG GCACCAATTT CAAGAACGGC GTGGAACTGG CGGTCAAGGA AATCAATGCC GCCGGTGGCA TCCTGGGCAA GAAAATCCAG ACCACCACCA ACGACACCCA GAGCAACCCG GGCGTGGCCA AGGGCTTGAC GCAAAAAGCC ATCGACAACG ACGTGTTCGC CATTTTCGGC CCGGTGTTCT CCGGCTCCAT CATGGTCAGC ATGGCCGAGT CGCGCCGCGC CGAGGTGCCC AATTTCACCG GCGGCGAGGC GGCCGGCATC ACCGAGCAGG GCAACCCCTA CGTGTTTCGC ACCAGCTTCA CCCAGGCGAG CGCCATGCCC AAGGTGGCGC GCTACATCAG CGAGCAGGCC AAGCTGAAAA CCCTGGCCAT CATTTATGTG AATAACGACT TCGGCAAGGG TGGGCTGGAT GCGCTGAAAA AAGCGCTGGC CAATTCGCCG ACCAAGGTCG TGGCCGAGAT TTCCACCGAC AACGGACAGG TTGACTTTTC CGCCGCCGTG CTCAAGGCCA AGCAGAGCAA TGCCGACGGC GTGTTCGCCT ATTCAAACGA AGAAGAGTCG GCGCGCATCC TGCGCGAGCT GCGCAAGCAG GGCTGGACCA AGCCCATCAT TGGCGAAACC ACGCTGACCG GCCAGAAAGT CATTGAACTG GCCGGCGACG CCGCCAACGG CGCGATTGCC CACGTCGGCC TGACGGTCGA TGCGCCGCAG CCGGCGATTC GCGCCTTTCG CGCCAAGTTC GAGAAGGAAT ACAAATATGT CTCCGACCAC AACGGCATGA AAGGCTACTC GGGCATTTAC ATCCTCAAGG CGGCGATTGA AAAGACCGGC AAGCTCGACC GCAAGGCGGT GGCCGCCACG CTGCACACGC TCAAGGTCAA GGCCGCCGAC CAGCCCGGCG TGCTGATGGA TGTGTCGTTT GACGCCAAAG GCGACCTGGA CCGCGAGAGC TTCATGATCG AGGTCAAGAA CGGCAAGCAG GAAGTCGTTT CCATCCTGCC ACCGCTGGGT GCCGGGGCCA CGCCAGCCGC CGCAGCAGCA GCGAAAAAAT AA
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Protein sequence | MNKRFALKLI AACAIAASAT AGFAQEVIKI ANIVELSGSG ASAGTNFKNG VELAVKEINA AGGILGKKIQ TTTNDTQSNP GVAKGLTQKA IDNDVFAIFG PVFSGSIMVS MAESRRAEVP NFTGGEAAGI TEQGNPYVFR TSFTQASAMP KVARYISEQA KLKTLAIIYV NNDFGKGGLD ALKKALANSP TKVVAEISTD NGQVDFSAAV LKAKQSNADG VFAYSNEEES ARILRELRKQ GWTKPIIGET TLTGQKVIEL AGDAANGAIA HVGLTVDAPQ PAIRAFRAKF EKEYKYVSDH NGMKGYSGIY ILKAAIEKTG KLDRKAVAAT LHTLKVKAAD QPGVLMDVSF DAKGDLDRES FMIEVKNGKQ EVVSILPPLG AGATPAAAAA AKK
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