| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1649 |
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| Symbol | |
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| ID | 4689201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1744042 |
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| End bp | 1744953 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639834654 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_981884 |
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| Protein GI | 121604555 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.264941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCCCA CCCTCAACGG CGCCACTGAT GTTTACCTGA TCCTCGGTGA TCCGGTCGAG
CAGGTGCGCG CGCCCGAATC GTTCAACCTG ATCTTTGCCA CGCTGGGCAT CAATGCGGTG
CTGGTGCCGG TGCATGTGCC GGCCGCCTCG GTGCGGGACT TTGTCCGGGC CGCCTTTTCG
GCCCGCAACA TCAAGGGCCT GTTCCTGACC ATCCCGCACA AGTCGCTGGT GATGGACCTG
CTCGATGAAT GCTCGGAACT TGGACGCCTG GCCGGTGCGG TCAACGCCGT GCGCTGCGAT
GCCGATGGCC GGCTGGTCGG CGCTTTGTTC GACGGCGAAG GGCTGGTCGA TTCGCTCAAT
GGCTTCAACA TCGCGTACAC CGGCAAACGG GTGCTGATTC TGGGCGCGGG CGGCGGCGCG
GCGGCCATTG CGGCTTCGCT GGTCAGCCCC GCTTCCCGCG TATCGAAGGG CGCGGCAGGC
GAAGTGGCCC TGTACGACCC GACGCCGGGC AAGGCTCGGG CGCTGGCCGA GCGGCTGTCT
CCGGCGACCG CGGCCAGGGT AACGGTAAGG GCGGCAGGCA GCAACGACCC GGCCGGGTTT
GATCTGGTCG TGAACGCCTC GCCACTGGGC CTGCAACGCA CCGACCCCAT GCCCTGCGAC
GTGTCGCGCA TGGCGCCGCA TGCCGCGCTG GTGGATATTT TGATGAAGAA CCAGCCCACG
CCCGTGGTGC GGGCGGCGCG CGCACTCGGC CTGGTGGCGC ATCCGGGCTT CGAGATGATG
ATCCGGCAGG GCGCGCTCTA CCTTGATTTC TTTGGCCTGC ATGCGGCCGC GCAGGCGGTA
CAGCGCGATT CCAGCTTTAT CCGGCAGCAG ATTTACCCCG CTGAGCTGCA AGGCGAAATT
TCACTTTTTT AA
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| Protein sequence | MLPTLNGATD VYLILGDPVE QVRAPESFNL IFATLGINAV LVPVHVPAAS VRDFVRAAFS
ARNIKGLFLT IPHKSLVMDL LDECSELGRL AGAVNAVRCD ADGRLVGALF DGEGLVDSLN
GFNIAYTGKR VLILGAGGGA AAIAASLVSP ASRVSKGAAG EVALYDPTPG KARALAERLS
PATAARVTVR AAGSNDPAGF DLVVNASPLG LQRTDPMPCD VSRMAPHAAL VDILMKNQPT
PVVRAARALG LVAHPGFEMM IRQGALYLDF FGLHAAAQAV QRDSSFIRQQ IYPAELQGEI
SLF
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