| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1648 |
|---|
| Symbol | |
|---|
| ID | 4689400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 1743035 |
|---|
| End bp | 1743847 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639834653 |
|---|
| Product | regulatory proteins, IclR |
|---|
| Protein accession | YP_981883 |
|---|
| Protein GI | 121604554 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.140229 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCGC CCGCCCAACC ACTGTCCCGG CCTTGCGTGC CGAACGCCCC GACATCCGCC
CTCGACAAGC GCGACTGGAT TGCCGGCCTT GAAAAAGGCC TGTCCATCAT TGAGTGTTTT
GACGATGCCA ATCCCCGCCT GACCGCCAGC CAGGCGGCTG CGCGCTGCGG ATTGAGCCGC
ACCGCCGCGC GCCGCTACCT GCTGACGCTG GAGCACCTGG GTTATGTCGC CACCGACGGC
AAGCTGTTCT GGCTGACCCC GCGCGTGCTC AGGCTGGGCC AGTCTTATCT GGAATCGGCG
CGATTGCCGC GCATGGTGCA GCCCTTTTTG CAACGCGTGA CCGCTGGAAC GCAGGAAAGC
GCTTATGTCA GCGTGATGGA CGGCGACGAG ATTGTCTACA TTGCGCGCAA TGGCGCCAAC
CGCGCCATGA ACACCGGCTA TGTGCTGGGC TCGCGGGTCC AGGCGCAGGT CACCGCCGCA
GGCTTGATGA TGCTGGCGCT GCGCGAACCC GGCTGGCTGG AGTCCTGGCT GAACACCCAT
GAGCTGAAGG CCTACACCTC CTACACCATT GCCAGCAAGG ACCGCCTGCG CATCGAACTG
GCGCGCGTGC GCGCCCAGGG ATGGGCCATT TCGGAGCAGC AGCTCGAACT CAATCACCGC
GGCATTGCCG TGCCGCTGCG GGACCGGCAC GGTGAAGTCA TGGGGGCCTT GAGCGTCACC
ATGCCCATCG GGCACGAGTC CAGCGAAGAT GCCGTTGCCC GCGTCCTGTC CGTGCTGAGC
GAAACCGCGC AGGCCATGCG CCACCTGATC TGA
|
|---|
| Protein sequence | MTSPAQPLSR PCVPNAPTSA LDKRDWIAGL EKGLSIIECF DDANPRLTAS QAAARCGLSR
TAARRYLLTL EHLGYVATDG KLFWLTPRVL RLGQSYLESA RLPRMVQPFL QRVTAGTQES
AYVSVMDGDE IVYIARNGAN RAMNTGYVLG SRVQAQVTAA GLMMLALREP GWLESWLNTH
ELKAYTSYTI ASKDRLRIEL ARVRAQGWAI SEQQLELNHR GIAVPLRDRH GEVMGALSVT
MPIGHESSED AVARVLSVLS ETAQAMRHLI
|
|---|
| |