| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1599 |
|---|
| Symbol | |
|---|
| ID | 4686586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1683763 |
|---|
| End bp | 1684545 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639834602 |
|---|
| Product | alpha-dehydro-beta-deoxy-D-glucarate aldolase |
|---|
| Protein accession | YP_981834 |
|---|
| Protein GI | 121604505 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3836] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase |
|---|
| TIGRFAM ID | [TIGR03239] 2-dehydro-3-deoxyglucarate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.817561 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAG CCACCCCTTA CCAGAGTTTT CCGAACAGCC TCAAGCAGGG CCTGCTGGCC
GGCAAGAAGC TGATCGGCTG CTGGTCGTCG CTGTCCAGCG CCATCACCAC CGAAGCGCTG
GGCGTGGCCG GTTTTGACTG GATTCTGCTC GACGCCGAAC ACTCGCCCAA CGACGTGTCC
ACCTTCATTC CGCAGCTGAT GGCGCTGAAG GACAGCGTGA GTGCGCCGGT GGTGCGGCCC
ACCTGCAACG ACACGGTGGA AATCAAGCGC CTGCTGGACG CCGGTTTCTA CAACTTCCTG
ATTCCGTTTG TCGAAAGCGC CGACGAGGCG CGGCGCGCGG TGGCCGCCAC GCGCTACCCG
CCGCAGGGCG TTCGCGGTGT CTCGGTGTCA CAGCGCAGCA ACCGCTACGG CACGATCCCT
GACTATTTCA AGTCGGTCAA CGAACACATC TGCGTGATGG TGCAGATCGA AAGCCTGGCC
GGCGTTGCGG CCGCGCGCGA GATTGCCGCC ATCGACGGCG TGGACTGCGT GTTCGTCGGA
CCTTCGGACT TGGCCGCCGG CATGGGCCAC CTGGGCAATG CCGGCCACCC GGATGTGCAG
GCGGTCATCG CGGCGGTGTT CGCCGACGCC AAGGCCTGCG GCAAACCGGC GGGCATCCTG
GCGCCGGTCG AGGTGGACGC CCGCCGCTAC CTGGCGATGG GCGCGACGTT CGTCGGCGTC
GGCAGCGACC TGGGCGCCTT CCGCTCGGCC ACGCAGGCCC TGTGCGACCG CTACCGCAGC
TGA
|
|---|
| Protein sequence | MTQATPYQSF PNSLKQGLLA GKKLIGCWSS LSSAITTEAL GVAGFDWILL DAEHSPNDVS
TFIPQLMALK DSVSAPVVRP TCNDTVEIKR LLDAGFYNFL IPFVESADEA RRAVAATRYP
PQGVRGVSVS QRSNRYGTIP DYFKSVNEHI CVMVQIESLA GVAAAREIAA IDGVDCVFVG
PSDLAAGMGH LGNAGHPDVQ AVIAAVFADA KACGKPAGIL APVEVDARRY LAMGATFVGV
GSDLGAFRSA TQALCDRYRS
|
|---|
| |