| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1561 |
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| Symbol | |
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| ID | 4689507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1648918 |
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| End bp | 1649751 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639834564 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_981796 |
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| Protein GI | 121604467 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0353213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAACG GAAACACTGA AATCATTGCC CACATCGGCT TCCCCACCCA CGCCTTCAAG
GCGCCGATGA TTTACAACCC CTGGTTTGAA AAAGCCGGGG TCAATGCCAT CGTCGTTCCC
ATGGGCTGCC AGGCGCAGGA CTACCCGGAT TTTTTGCGCG CCGTGTTCAA GCTCGCCAAC
ATCCGGGGCG CGCTCATCAC CATGCCGCAC AAGGTCACCA CCGTCGGCTT GCTGGACGAG
GTGTTTCCCA CGGCTGCGAT TGCCGGTTCG TGCAATGCCG TGCGCCGCAC CGCCGACGGC
CGACTGCAGG GCGACATGTT CGACGGCGAA GGCTTTGTGC GCGGCGTGCT GCGCAAGGGC
CTGACGCTCA AGGGCGCCCG GGCGCTGGTG GTGGGCAGCG GCGGCGTGGG CTCGGCCATT
GCGGCGTCGC TGGCTGCGGC CGGCGTGGCG GCACTGAGCC TGTTTGATGT TCACGGGCCT
TCCGCGCAGG GCTTGGGCGA GCGTCTGCGC CAGCACTATC CGGCGCTTGA CGTCGTCACC
GGCTCCAACG ACCCCGCAGG CTTTGACCTG GTGGTCAATG CCACGCCCAT GGGGATGAAC
GAAGGCGACG CGATGCCGAT GGACGTGTCG CGCATCGACT CCGCTACCTT TGTGGGCGAA
GTGGTGATGA AAACCGAGAT GACTGCTTTT CTGGGGGCTG CGCAGGCGCG CGGCTGCCAG
GTGCAGGTGG GCTCGGACAT GCTGTTTGAG CAAATCCCCG CGTATCTGGA GTTTTTTGGA
TTCCCCAGCA CCACACCCAA CGTGCTGCGC TCCATTGCCC GGCTGAGCTA TTAA
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| Protein sequence | MINGNTEIIA HIGFPTHAFK APMIYNPWFE KAGVNAIVVP MGCQAQDYPD FLRAVFKLAN
IRGALITMPH KVTTVGLLDE VFPTAAIAGS CNAVRRTADG RLQGDMFDGE GFVRGVLRKG
LTLKGARALV VGSGGVGSAI AASLAAAGVA ALSLFDVHGP SAQGLGERLR QHYPALDVVT
GSNDPAGFDL VVNATPMGMN EGDAMPMDVS RIDSATFVGE VVMKTEMTAF LGAAQARGCQ
VQVGSDMLFE QIPAYLEFFG FPSTTPNVLR SIARLSY
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