| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1557 |
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| Symbol | |
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| ID | 4688917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1643984 |
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| End bp | 1645261 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639834560 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_981792 |
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| Protein GI | 121604463 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.063123 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATCA TCATTTTCCT GGGTTCCATG CTGGGCGCCA TGGCGCTGGG CATTCCGATT
GCTTTTTCCC TGCTGCTGTG CGGCGCCGCG CTGATGTGGC ACCTGAACAT GTTCGACGCG
CAGATCCTGG CGCAAAACGT GATCAACGGC GCCGACAGCT TTCCGCTGCT GGCCGTGCCT
TTCTTCATGC TGGCCGGCGA GATCATGAAC GCCGGCGGCC TGTCGCGGCG CATCGTGAAC
TTTGCGATGG CGCTGGTCGG TCACGTCAAG GGCGGGCTGG GCTATGTGAC CATCGTCGCC
GCCGTCATCC TGGCCTCGCT GTCGGGTTCG GCCGTGGCCG ATGCCGCCGC GCTGACCGCC
TTGCTGCTGC CGATGATGGT CGCGGCCGGG CATGACAAGG CGCGCTCGGC CGGATTGATT
GCCTCGGCCG GCATCATTGC GCCCATCATT CCGCCCAGCA TTGCCTTCGT CATCTTCGGC
GTCGCGGCCA ACGTGTCGAT TTCCAAGCTG TTCATGGCCG GCATCTTTCC GGGCATCTGG
CTGGCCGTGT CGCTGGTGTT TACCTGGTGG TATCTGGTGC GCAAGGAAGT GGTGGTGCCG
CCTCCGCGCA AGACGGCCGC CGAAGTGGTC GAGGCGCTAC GCCTGGCGAC CTGGGCTTTG
GTGCTGCCTT TCATCATCGT GTTCGGCCTG AAGTTCGGCG TGTTCACGCC GACCGAGGCG
GCGGTGGTGG CTGCGGTGTA CTCGCTGTTT GTCTCGACCG TCATTTACCG CGAACTCACT
ATCAAGCAGC TGGTGCCGCT GTTTGTCTCG GCCGCCAAGA CCTGCTCCGT GGTGATGTTC
CTGGTCGCCG CCGCCATGGT CTCGGCCTGG CTGATCACGG TGGCCAACTT GCCGGCGCAA
GTGGTTGCCT TGCTGCAGCC CTTGCTCGAC AGCCCCCGCT TGCTGATGGT GGCGATCATG
GTGCTGACCA TGCTGGTGGG AACGGCGCTG GACATGACAC CCACCATCTT GCTGCTGACT
CCTGTGCTCA TGCCGGTGAT CAAGGCCGCA GGCATCGATC CGGTGTATTT CGGCGTGCTG
TTCGTCATCA ACAACGCCAT CGGCCTGATC ACCCCGCCCG TGGGCACGGT GCTCAATGCG
GTGGCCGGCG TGGGCAAGAT CAGCATGGAC GAGGTGACCC GGGGCGTGTG GCCTTTCATG
ATCGCGCAGT TCACCATCAT GTTTTTGATG ATCGCTTTCC CGCAGCTCGT CATGGTGCCG
GCCCGCTGGT TCTATTGA
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| Protein sequence | MTIIIFLGSM LGAMALGIPI AFSLLLCGAA LMWHLNMFDA QILAQNVING ADSFPLLAVP
FFMLAGEIMN AGGLSRRIVN FAMALVGHVK GGLGYVTIVA AVILASLSGS AVADAAALTA
LLLPMMVAAG HDKARSAGLI ASAGIIAPII PPSIAFVIFG VAANVSISKL FMAGIFPGIW
LAVSLVFTWW YLVRKEVVVP PPRKTAAEVV EALRLATWAL VLPFIIVFGL KFGVFTPTEA
AVVAAVYSLF VSTVIYRELT IKQLVPLFVS AAKTCSVVMF LVAAAMVSAW LITVANLPAQ
VVALLQPLLD SPRLLMVAIM VLTMLVGTAL DMTPTILLLT PVLMPVIKAA GIDPVYFGVL
FVINNAIGLI TPPVGTVLNA VAGVGKISMD EVTRGVWPFM IAQFTIMFLM IAFPQLVMVP
ARWFY
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